Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CALENFAJ_91 | 342 | 2261 | tet(O) | ARO:3000190 | tet(O) | 97.50 | 100.00 | M18896.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CALENFAJ_136 | 17282 | 18381 | tet(40) | Doxycycline, Tetracycline | 99.36 | 90.09 | FJ158002 |
| CALENFAJ_91 | 342 | 2261 | tet(O) | Doxycycline, Tetracycline, Minocycline | 99.27 | 100.00 | Y07780 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CALENFAJ_91 | 345 | 2261 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | BLASTX | 99.06 | 100.00 | WP_014636291.1 |
| CALENFAJ_136 | 17285 | 18454 | tet(40) | tetracycline efflux MFS transporter Tet(40) | INTERNAL_STOP | 92.41 | 97.29 | WP_009247026.1 |
| CALENFAJ_111 | 11437 | 11637 | vanU-G | glycopeptide resistance transcriptional regulator VanU-G | PARTIALX | 80.60 | 89.33 | WP_021418929.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CALENFAJ_41 | 321 | 1000 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CALENFAJ_1 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_2 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_3 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_4 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_5 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_6 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_7 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_8 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_9 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_10 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_11 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_12 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_13 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_14 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_15 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_16 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_17 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_18 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_19 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_21 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_22 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_23 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_24 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_26 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_28 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_30 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_31 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_32 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_33 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_34 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_35 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_36 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_37 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_38 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_39 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_40 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_41 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_42 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_44 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_45 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_46 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_47 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_48 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_49 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_50 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_51 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_52 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_53 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_54 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_55 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_56 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_57 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_58 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_59 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_60 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_61 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_62 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_63 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_64 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_65 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_66 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_67 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_68 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_70 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_71 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_72 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_73 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_75 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_76 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_77 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_79 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_80 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_81 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_82 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_83 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_84 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_85 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_87 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_88 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_89 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_90 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_91 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_92 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_93 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_94 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_95 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_96 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_97 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_98 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_99 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_100 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_101 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_102 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_103 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_104 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_105 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_106 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_107 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_108 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_109 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_110 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_111 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_112 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_113 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_114 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_115 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_116 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_117 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_118 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_119 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_120 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_121 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_122 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_123 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_124 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_125 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_126 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_127 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_128 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_129 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_130 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_131 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_132 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_133 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_134 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_135 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_136 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_137 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_138 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_139 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_140 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_141 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_142 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_143 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_144 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_145 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_146 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_147 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_148 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_149 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_150 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_151 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_152 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_153 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_154 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_155 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_156 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_157 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_158 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_159 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_160 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_161 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_162 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_163 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_164 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_165 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_166 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_167 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_168 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_169 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_170 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_171 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_173 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_174 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_175 | 0.0 | 1.0 | 0.0 |
| CALENFAJ_176 | 1.0 | 0.0 | 1.0 |
| CALENFAJ_177 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CALENFAJ_89 | 104705 | 112624 | False | Siphoviridae | VOG4545, |
| CALENFAJ_92 | 90065 | 107594 | False | Siphoviridae | VOG2352, |
| CALENFAJ_111 | 38393 | 53957 | False | Siphoviridae | VOG5668, |
| CALENFAJ_133 | 5227 | 18510 | True | Unknown | VOG0275, |
Phigaro v2.4.0 (Database: Jan. 2024 release)