Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MDLEHPFK_47 | 2880 | 4799 | tet(O) | ARO:3000190 | tet(O) | 97.50 | 100.00 | M18896.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MDLEHPFK_129 | 25059 | 26158 | tet(40) | Doxycycline, Tetracycline | 99.36 | 90.09 | FJ158002 |
| MDLEHPFK_47 | 2880 | 4799 | tet(O) | Doxycycline, Tetracycline, Minocycline | 99.27 | 100.00 | Y07780 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MDLEHPFK_47 | 2880 | 4796 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | BLASTX | 99.06 | 100.00 | WP_014636291.1 |
| MDLEHPFK_129 | 25062 | 26231 | tet(40) | tetracycline efflux MFS transporter Tet(40) | INTERNAL_STOP | 92.41 | 97.29 | WP_009247026.1 |
| MDLEHPFK_152 | 7568 | 7768 | vanU-G | glycopeptide resistance transcriptional regulator VanU-G | PARTIALX | 80.60 | 89.33 | WP_021418929.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MDLEHPFK_1 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_2 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_3 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_4 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_5 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_6 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_7 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_8 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_9 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_10 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_11 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_12 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_13 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_14 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_15 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_16 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_17 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_18 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_19 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_20 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_21 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_22 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_23 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_25 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_26 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_27 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_28 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_29 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_30 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_31 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_32 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_33 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_35 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_36 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_37 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_38 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_39 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_40 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_41 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_42 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_43 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_44 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_45 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_46 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_47 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_48 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_49 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_50 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_51 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_52 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_53 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_54 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_55 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_57 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_58 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_59 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_60 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_61 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_62 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_63 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_65 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_66 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_67 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_68 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_69 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_70 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_72 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_74 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_75 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_76 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_77 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_78 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_79 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_81 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_82 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_84 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_85 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_86 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_88 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_89 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_90 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_91 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_92 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_93 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_94 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_95 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_96 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_97 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_98 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_99 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_100 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_101 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_102 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_103 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_104 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_105 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_106 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_107 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_108 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_109 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_110 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_111 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_112 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_113 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_114 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_115 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_116 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_117 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_118 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_119 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_120 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_121 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_122 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_123 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_124 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_125 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_126 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_127 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_128 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_129 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_130 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_131 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_132 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_133 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_134 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_135 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_136 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_137 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_138 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_139 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_140 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_141 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_142 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_143 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_144 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_145 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_146 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_147 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_148 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_149 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_151 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_152 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_153 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_154 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_155 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_156 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_157 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_158 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_159 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_160 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_161 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_162 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_163 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_164 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_165 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_166 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_167 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_168 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_169 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_170 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_171 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_172 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_173 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_174 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_175 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_176 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_177 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_178 | 1.0 | 0.0 | 1.0 |
| MDLEHPFK_180 | 0.0 | 1.0 | 0.0 |
| MDLEHPFK_181 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MDLEHPFK_91 | 90066 | 107595 | False | Siphoviridae | VOG2352, |
| MDLEHPFK_92 | 104497 | 115672 | False | Siphoviridae | VOG1335, |
| MDLEHPFK_108 | 27074 | 40357 | True | Unknown | VOG5036, |
| MDLEHPFK_137 | 19996 | 35328 | False | Siphoviridae | VOG6495, |
Phigaro v2.4.0 (Database: Jan. 2024 release)