Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JALGNFGF_39 | 3957 | 5876 | tet(O) | ARO:3000190 | tet(O) | 97.50 | 100.00 | M18896.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JALGNFGF_116 | 26855 | 27954 | tet(40) | Doxycycline, Tetracycline | 99.36 | 90.09 | FJ158002 |
| JALGNFGF_39 | 3957 | 5876 | tet(O) | Doxycycline, Tetracycline, Minocycline | 99.27 | 100.00 | Y07780 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JALGNFGF_39 | 3957 | 5873 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | BLASTX | 99.06 | 100.00 | WP_014636291.1 |
| JALGNFGF_116 | 26858 | 28027 | tet(40) | tetracycline efflux MFS transporter Tet(40) | INTERNAL_STOP | 92.41 | 97.29 | WP_009247026.1 |
| JALGNFGF_106 | 11437 | 11637 | vanU-G | glycopeptide resistance transcriptional regulator VanU-G | PARTIALX | 80.60 | 89.33 | WP_021418929.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JALGNFGF_1 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_2 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_3 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_4 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_5 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_6 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_7 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_8 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_9 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_10 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_11 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_12 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_13 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_14 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_15 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_16 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_17 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_18 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_19 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_21 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_22 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_23 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_24 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_25 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_26 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_27 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_29 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_31 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_33 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_34 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_35 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_36 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_37 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_38 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_39 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_40 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_41 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_43 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_44 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_45 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_46 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_47 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_48 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_49 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_50 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_51 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_52 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_53 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_54 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_55 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_56 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_57 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_58 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_59 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_60 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_61 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_62 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_63 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_64 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_65 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_66 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_67 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_68 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_69 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_70 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_72 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_73 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_74 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_75 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_76 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_77 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_78 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_79 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_80 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_81 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_83 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_84 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_85 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_86 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_87 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_88 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_89 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_90 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_91 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_92 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_93 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_94 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_95 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_96 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_97 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_98 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_99 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_100 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_101 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_102 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_103 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_104 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_105 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_106 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_107 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_108 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_109 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_110 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_111 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_112 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_113 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_114 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_115 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_116 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_117 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_118 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_119 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_120 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_121 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_122 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_123 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_124 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_125 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_126 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_127 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_128 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_129 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_130 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_131 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_132 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_133 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_134 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_135 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_136 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_137 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_138 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_139 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_140 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_141 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_142 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_143 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_144 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_145 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_146 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_147 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_148 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_149 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_150 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_151 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_152 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_153 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_154 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_155 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_156 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_157 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_158 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_159 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_160 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_161 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_162 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_163 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_164 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_165 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_166 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_167 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_168 | 1.0 | 0.0 | 1.0 |
| JALGNFGF_169 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_170 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_171 | 0.0 | 1.0 | 0.0 |
| JALGNFGF_172 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JALGNFGF_84 | 104705 | 112624 | False | Siphoviridae | VOG4545, |
| JALGNFGF_95 | 5227 | 18510 | True | Unknown | VOG0275, |
| JALGNFGF_101 | 14836 | 31873 | False | Siphoviridae | VOG2352, |
| JALGNFGF_106 | 38625 | 53957 | False | Siphoviridae | VOG6495, |
Phigaro v2.4.0 (Database: Jan. 2024 release)