Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CFNJLHMI_31 | 124225 | 124929 | WalR | 7.40e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| CFNJLHMI_3 | 48617 | 48811 | CspR | 6.19e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| CFNJLHMI_3 | 48617 | 48814 | CspA | 9.49e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CFNJLHMI_35 | 17097 | 17998 | rep38 | 902 / 903 | 96.12 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CFNJLHMI_1 | 0.0 | 1.0 | 0.0 |
| CFNJLHMI_2 | 0.0 | 1.0 | 0.0 |
| CFNJLHMI_3 | 0.0 | 1.0 | 0.0 |
| CFNJLHMI_4 | 0.0 | 1.0 | 0.0 |
| CFNJLHMI_5 | 0.0 | 1.0 | 0.0 |
| CFNJLHMI_6 | 0.0 | 1.0 | 0.0 |
| CFNJLHMI_7 | 0.0 | 1.0 | 0.0 |
| CFNJLHMI_8 | 0.0 | 1.0 | 0.0 |
| CFNJLHMI_9 | 0.0 | 1.0 | 0.0 |
| CFNJLHMI_10 | 0.0 | 1.0 | 0.0 |
| CFNJLHMI_13 | 0.0 | 1.0 | 0.0 |
| CFNJLHMI_14 | 0.0 | 1.0 | 0.0 |
| CFNJLHMI_16 | 1.0 | 0.0 | 1.0 |
| CFNJLHMI_17 | 0.0 | 1.0 | 0.0 |
| CFNJLHMI_18 | 0.0 | 1.0 | 0.0 |
| CFNJLHMI_19 | 0.0 | 1.0 | 0.0 |
| CFNJLHMI_20 | 0.0 | 1.0 | 0.0 |
| CFNJLHMI_22 | 1.0 | 0.0 | 1.0 |
| CFNJLHMI_23 | 0.0 | 1.0 | 0.0 |
| CFNJLHMI_25 | 0.0 | 1.0 | 0.0 |
| CFNJLHMI_26 | 0.0 | 1.0 | 0.0 |
| CFNJLHMI_27 | 0.0 | 1.0 | 0.0 |
| CFNJLHMI_28 | 0.0 | 1.0 | 0.0 |
| CFNJLHMI_29 | 0.0 | 1.0 | 0.0 |
| CFNJLHMI_30 | 1.0 | 0.0 | 1.0 |
| CFNJLHMI_31 | 0.0 | 1.0 | 0.0 |
| CFNJLHMI_32 | 1.0 | 0.0 | 1.0 |
| CFNJLHMI_33 | 1.0 | 0.0 | 1.0 |
| CFNJLHMI_34 | 0.0 | 1.0 | 0.0 |
| CFNJLHMI_35 | 1.0 | 0.0 | 1.0 |
| CFNJLHMI_36 | 1.0 | 0.0 | 1.0 |
| CFNJLHMI_37 | 1.0 | 0.0 | 1.0 |
| CFNJLHMI_38 | 1.0 | 0.0 | 1.0 |
| CFNJLHMI_39 | 0.0 | 1.0 | 0.0 |
| CFNJLHMI_41 | 1.0 | 0.0 | 1.0 |
| CFNJLHMI_42 | 1.0 | 0.0 | 1.0 |
| CFNJLHMI_43 | 1.0 | 0.0 | 1.0 |
| CFNJLHMI_45 | 0.0 | 1.0 | 0.0 |
| CFNJLHMI_46 | 0.0 | 1.0 | 0.0 |
| CFNJLHMI_47 | 0.0 | 1.0 | 0.0 |
| CFNJLHMI_48 | 0.0 | 1.0 | 0.0 |
| CFNJLHMI_49 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CFNJLHMI_6 | 81306 | 109680 | False | Siphoviridae | VOG6005, VOG0044, VOG9671, VOG0198, VOG4841, VOG10904, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG4545, VOG4605, VOG4599, VOG10957, VOG8870, VOG9998 |
| CFNJLHMI_14 | 68756 | 94703 | False | Siphoviridae | VOG0054, VOG1637, VOG8294, VOG3498, VOG10608, VOG1335, VOG4545, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG10914, VOG4564, VOG7038, VOG0720, VOG4544, VOG0796 |
| CFNJLHMI_46 | 70525 | 71223 | False | Unknown | VOG3622, VOG6139 |
| CFNJLHMI_47 | 3976 | 25370 | False | Siphoviridae | VOG1183, VOG0611, VOG0691, VOG0692, VOG0692, VOG9317, VOG4711, VOG0695, VOG0696, VOG0697, VOG6548, VOG9763, VOG0701, VOG6163, VOG0801, VOG4619, VOG4626 |
Phigaro v2.4.0 (Database: Jan. 2024 release)