Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
GAKALINJ_18648587189WalR1.42e-114transcriptional regulatory protein84.25100.00EPH95667
GAKALINJ_34444663444857CspR2.95e-29cold shock protein84.6198.48AAO82613
GAKALINJ_34444663444860CspA4.53e-29cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
GAKALINJ_111723017789rep38560 / 90398.75CP005943

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
GAKALINJ_10.01.00.0
GAKALINJ_20.01.00.0
GAKALINJ_30.01.00.0
GAKALINJ_40.01.00.0
GAKALINJ_50.01.00.0
GAKALINJ_61.00.01.0
GAKALINJ_70.01.00.0
GAKALINJ_91.00.01.0
GAKALINJ_101.00.01.0
GAKALINJ_111.00.01.0
GAKALINJ_120.01.00.0
GAKALINJ_131.00.01.0
GAKALINJ_141.00.01.0
GAKALINJ_151.00.01.0
GAKALINJ_161.00.01.0
GAKALINJ_171.00.01.0
GAKALINJ_190.01.00.0
GAKALINJ_201.00.01.0
GAKALINJ_211.00.01.0
GAKALINJ_221.00.01.0
GAKALINJ_231.00.01.0
GAKALINJ_241.00.01.0
GAKALINJ_251.00.01.0
GAKALINJ_260.01.00.0
GAKALINJ_271.00.01.0
GAKALINJ_281.00.01.0
GAKALINJ_340.01.00.0
GAKALINJ_350.01.00.0
GAKALINJ_360.01.00.0
GAKALINJ_370.01.00.0
GAKALINJ_380.01.00.0
GAKALINJ_391.00.01.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
GAKALINJ_2175733562FalseSiphoviridaeVOG8294, VOG3498, VOG10608, VOG1335, VOG4545, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG10914, VOG4564, VOG0720, VOG4544, VOG0796, VOG9295, VOG0198, VOG4693, VOG2591, VOG4566, VOG6495
GAKALINJ_343260564099FalseSiphoviridaeVOG6450, VOG0321, VOG10904, VOG4548, VOG10904, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG0044, VOG4673, VOG6154, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917, VOG9888
GAKALINJ_34106493110636FalseUnknownVOG9667, VOG3622, VOG3547, VOG3549, VOG0650
GAKALINJ_34114481140711FalseSiphoviridaeVOG0198, VOG4178, VOG3699, VOG4544, VOG0691, VOG0692, VOG4555, VOG4572, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG4910, VOG0801, VOG4619, VOG3463, VOG8704, VOG8438, VOG6373, VOG4334, VOG4705, VOG8294, VOG1637, VOG0054

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements