Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
KMOIHJCH_1124979125683WalR1.82e-114transcriptional regulatory protein84.25100.00EPH95667
KMOIHJCH_57260239260433CspR1.54e-29cold shock protein84.6198.48AAO82613
KMOIHJCH_57260239260436CspA2.37e-29cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
KMOIHJCH_1765727501rep28930 / 93097.53CP003162

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
KMOIHJCH_10.01.00.0
KMOIHJCH_21.00.01.0
KMOIHJCH_30.01.00.0
KMOIHJCH_40.01.00.0
KMOIHJCH_51.00.01.0
KMOIHJCH_61.00.01.0
KMOIHJCH_70.01.00.0
KMOIHJCH_80.01.00.0
KMOIHJCH_90.01.00.0
KMOIHJCH_101.00.01.0
KMOIHJCH_110.01.00.0
KMOIHJCH_120.01.00.0
KMOIHJCH_130.01.00.0
KMOIHJCH_140.01.00.0
KMOIHJCH_150.01.00.0
KMOIHJCH_160.01.00.0
KMOIHJCH_171.00.01.0
KMOIHJCH_180.01.00.0
KMOIHJCH_191.00.01.0
KMOIHJCH_210.01.00.0
KMOIHJCH_221.00.01.0
KMOIHJCH_251.00.01.0
KMOIHJCH_261.00.01.0
KMOIHJCH_271.00.01.0
KMOIHJCH_281.00.01.0
KMOIHJCH_291.00.01.0
KMOIHJCH_301.00.01.0
KMOIHJCH_311.00.01.0
KMOIHJCH_331.00.01.0
KMOIHJCH_340.01.00.0
KMOIHJCH_351.00.01.0
KMOIHJCH_361.00.01.0
KMOIHJCH_371.00.01.0
KMOIHJCH_381.00.01.0
KMOIHJCH_391.00.01.0
KMOIHJCH_401.00.01.0
KMOIHJCH_411.00.01.0
KMOIHJCH_421.00.01.0
KMOIHJCH_431.00.01.0
KMOIHJCH_440.01.00.0
KMOIHJCH_450.01.00.0
KMOIHJCH_540.01.00.0
KMOIHJCH_551.00.01.0
KMOIHJCH_560.01.00.0
KMOIHJCH_570.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
KMOIHJCH_1113383124059FalseSiphoviridaeVOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204, VOG0198
KMOIHJCH_8176203211905FalseSiphoviridaeVOG1637, VOG8294, VOG3498, VOG10608, VOG1335, VOG4545, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG10914, VOG4564, VOG7038, VOG0720, VOG4544, VOG0796, VOG0045, VOG1183, VOG0198, VOG3643, VOG0044, VOG4693, VOG4552, VOG4566, VOG0186, VOG1309, VOG7298, VOG0181
KMOIHJCH_542986437203FalseSiphoviridaeVOG8925, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609
KMOIHJCH_544117861811FalseSiphoviridaeVOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917, VOG9888

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements