Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PMDBBNKE_29 | 124273 | 124977 | WalR | 7.41e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| PMDBBNKE_3 | 48617 | 48811 | CspR | 6.19e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| PMDBBNKE_3 | 48617 | 48814 | CspA | 9.49e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PMDBBNKE_31 | 17097 | 17998 | rep38 | 902 / 903 | 96.12 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PMDBBNKE_1 | 0.0 | 1.0 | 0.0 |
| PMDBBNKE_2 | 0.0 | 1.0 | 0.0 |
| PMDBBNKE_3 | 0.0 | 1.0 | 0.0 |
| PMDBBNKE_4 | 0.0 | 1.0 | 0.0 |
| PMDBBNKE_5 | 0.0 | 1.0 | 0.0 |
| PMDBBNKE_6 | 0.0 | 1.0 | 0.0 |
| PMDBBNKE_7 | 0.0 | 1.0 | 0.0 |
| PMDBBNKE_8 | 0.0 | 1.0 | 0.0 |
| PMDBBNKE_9 | 0.0 | 1.0 | 0.0 |
| PMDBBNKE_10 | 0.0 | 1.0 | 0.0 |
| PMDBBNKE_13 | 0.0 | 1.0 | 0.0 |
| PMDBBNKE_14 | 0.0 | 1.0 | 0.0 |
| PMDBBNKE_15 | 1.0 | 0.0 | 1.0 |
| PMDBBNKE_16 | 0.0 | 1.0 | 0.0 |
| PMDBBNKE_17 | 0.0 | 1.0 | 0.0 |
| PMDBBNKE_18 | 0.0 | 1.0 | 0.0 |
| PMDBBNKE_20 | 1.0 | 0.0 | 1.0 |
| PMDBBNKE_21 | 0.0 | 1.0 | 0.0 |
| PMDBBNKE_22 | 0.0 | 1.0 | 0.0 |
| PMDBBNKE_24 | 0.0 | 1.0 | 0.0 |
| PMDBBNKE_25 | 0.0 | 1.0 | 0.0 |
| PMDBBNKE_26 | 0.0 | 1.0 | 0.0 |
| PMDBBNKE_27 | 0.0 | 1.0 | 0.0 |
| PMDBBNKE_28 | 1.0 | 0.0 | 1.0 |
| PMDBBNKE_29 | 0.0 | 1.0 | 0.0 |
| PMDBBNKE_30 | 1.0 | 0.0 | 1.0 |
| PMDBBNKE_31 | 1.0 | 0.0 | 1.0 |
| PMDBBNKE_32 | 1.0 | 0.0 | 1.0 |
| PMDBBNKE_33 | 1.0 | 0.0 | 1.0 |
| PMDBBNKE_34 | 0.0 | 1.0 | 0.0 |
| PMDBBNKE_35 | 1.0 | 0.0 | 1.0 |
| PMDBBNKE_36 | 1.0 | 0.0 | 1.0 |
| PMDBBNKE_37 | 0.0 | 1.0 | 0.0 |
| PMDBBNKE_39 | 1.0 | 0.0 | 1.0 |
| PMDBBNKE_40 | 1.0 | 0.0 | 1.0 |
| PMDBBNKE_42 | 0.0 | 1.0 | 0.0 |
| PMDBBNKE_43 | 0.0 | 1.0 | 0.0 |
| PMDBBNKE_44 | 0.0 | 1.0 | 0.0 |
| PMDBBNKE_45 | 0.0 | 1.0 | 0.0 |
| PMDBBNKE_46 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PMDBBNKE_6 | 81922 | 110296 | False | Siphoviridae | VOG6005, VOG0044, VOG9671, VOG0198, VOG4841, VOG10904, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG4545, VOG4605, VOG4599, VOG10957, VOG8870, VOG9998 |
| PMDBBNKE_14 | 68895 | 104594 | False | Siphoviridae | VOG0054, VOG1637, VOG8294, VOG3498, VOG10608, VOG1335, VOG4545, VOG1334, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG10914, VOG4564, VOG7038, VOG0720, VOG4544, VOG0796, VOG5709, VOG0198, VOG4693, VOG2591, VOG4566, VOG0186, VOG1309, VOG7298, VOG0181, VOG6495, VOG11003 |
| PMDBBNKE_44 | 70782 | 102667 | False | Siphoviridae | VOG6139, VOG8615, VOG3549, VOG0650, VOG1302, VOG1309, VOG0186, VOG4566, VOG4552, VOG4693, VOG5047, VOG0198, VOG1183, VOG0611, VOG0691, VOG0692, VOG0692, VOG9317, VOG4711, VOG0695, VOG0696, VOG0697, VOG6548, VOG9763, VOG0701, VOG6163, VOG0801, VOG4619, VOG4626 |
Phigaro v2.4.0 (Database: Jan. 2024 release)