Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PPCBPHFP_1 | 1070161 | 1070865 | WalR | 2.29e-111 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PPCBPHFP_2 | 58982 | 60040 | repUS75 | 1059 / 1059 | 100.00 | CP002393 |
| PPCBPHFP_3 | 4991 | 6052 | repUS74 | 1062 / 1062 | 99.72 | CP000424 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PPCBPHFP_1 | 0.0 | 1.0 | 0.0 |
| PPCBPHFP_2 | 1.0 | 0.0 | 1.0 |
| PPCBPHFP_3 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PPCBPHFP_1 | 4186 | 11227 | False | Siphoviridae | VOG0198, VOG1563, VOG1298, VOG1298, VOG0982, VOG0189, VOG4799, VOG10867, VOG0181, VOG4552, VOG5353 |
| PPCBPHFP_1 | 156446 | 165194 | False | Siphoviridae | VOG4568, VOG4556, VOG5051, VOG1886, VOG4581, VOG4609, VOG4632 |
| PPCBPHFP_1 | 387265 | 404523 | True | Siphoviridae | VOG5532, VOG4549, VOG4570, VOG4570, VOG5088, VOG5088, VOG0198, VOG5088, VOG3307, VOG5317, VOG5280, VOG0982, VOG0189, VOG4799, VOG10867, VOG0181, VOG10059, VOG5088 |
| PPCBPHFP_1 | 2770600 | 2807296 | False | Siphoviridae | VOG4605, VOG4918, VOG0703, VOG7017, VOG0861, VOG7896, VOG6455, VOG4599, VOG4605, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1322, VOG1887, VOG3434, VOG4555, VOG1300, VOG5616, VOG4564, VOG0720, VOG4544, VOG0796, VOG4549, VOG4570, VOG0198, VOG3307, VOG3643, VOG3643, VOG3643, VOG2820, VOG4693, VOG6623, VOG9860, VOG11003, VOG8987, VOG0226, VOG4855, VOG0186, VOG1309, VOG8241 |
| PPCBPHFP_1 | 2902201 | 2911035 | False | Siphoviridae | VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205, VOG4606 |
| PPCBPHFP_1 | 3071046 | 3119009 | False | Siphoviridae | VOG0703, VOG0054, VOG1637, VOG0648, VOG3498, VOG4763, VOG4633, VOG4545, VOG1898, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG0519, VOG4841, VOG9153, VOG0198, VOG1563, VOG1298, VOG1298, VOG0982, VOG0189, VOG4799, VOG10867, VOG0181, VOG4552, VOG5353, VOG0862, VOG3304, VOG6422, VOG0275, VOG4649, VOG0703, VOG0054, VOG1637, VOG0648, VOG3498, VOG4763, VOG4633, VOG4545, VOG1898, VOG4589, VOG0204 |
Phigaro v2.4.0 (Database: Jan. 2024 release)