Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 9 | 9.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HCFINGKG_184 | 31847 | 32998 | tufA | 0.0 | elongation factor Tu | 86.46 | 97.21 | AHM69299 |
| HCFINGKG_132 | 15724 | 14219 | atpA | 0.0 | ATP synthase subunit alpha | 80.08 | 100.00 | ABD31377 |
| HCFINGKG_37 | 1704 | 2573 | pdxS | 1.98e-155 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| HCFINGKG_112 | 34022 | 34798 | CodY | 2.38e-128 | nutrient-responsive regulator | 81.85 | 100.00 | ACJ80679 |
| HCFINGKG_112 | 34022 | 34798 | codY | 7.72e-125 | global regulator and isoleucine sensor | 80.69 | 100.00 | ASW39076 |
| HCFINGKG_204 | 441 | 1010 | ClpP | 4.84e-105 | part of proteolytic complex | 83.68 | 97.44 | BAB94595 |
| HCFINGKG_152 | 18805 | 19197 | spxA1 | 2.33e-73 | redox-responsive transcription factor | 88.55 | 100.00 | AAF21893 |
| HCFINGKG_152 | 18805 | 19197 | spx | 5.04e-68 | essential gene which is a thiol/oxidative stress sensor | 80.92 | 100.00 | BAB57159 |
| HCFINGKG_157 | 1204 | 962 | SpoVG | 6.17e-40 | RNA-binding protein | 82.72 | 79.41 | AAT02994 |
| HCFINGKG_68 | 30002 | 29808 | CspD | 7.42e-30 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| HCFINGKG_35 | 33807 | 33613 | CspA | 1.14e-29 | cold shock protein | 81.54 | 98.48 | CAA62903 |
| HCFINGKG_68 | 30002 | 29805 | CspB | 4.99e-29 | cold shock protein | 80.30 | 100.00 | CAD00094 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HCFINGKG_1 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_2 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_3 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_4 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_5 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_6 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_7 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_8 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_9 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_10 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_13 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_15 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_16 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_17 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_18 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_19 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_20 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_21 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_22 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_23 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_24 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_26 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_27 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_28 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_29 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_30 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_31 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_32 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_33 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_34 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_35 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_36 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_37 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_38 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_39 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_40 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_41 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_42 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_43 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_46 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_47 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_48 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_49 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_50 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_51 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_52 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_53 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_54 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_55 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_57 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_61 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_62 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_63 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_64 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_65 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_66 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_67 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_68 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_69 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_70 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_71 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_72 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_73 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_74 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_75 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_76 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_77 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_79 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_81 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_83 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_84 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_85 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_90 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_91 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_92 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_95 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_97 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_98 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_100 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_101 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_102 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_104 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_105 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_110 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_112 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_113 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_117 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_120 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_123 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_124 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_132 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_133 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_134 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_135 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_136 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_137 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_138 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_139 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_140 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_141 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_142 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_143 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_144 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_145 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_146 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_147 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_148 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_149 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_150 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_151 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_152 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_153 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_154 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_155 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_156 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_157 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_158 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_159 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_160 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_161 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_162 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_163 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_164 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_165 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_166 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_167 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_168 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_169 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_170 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_171 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_172 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_173 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_174 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_175 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_176 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_177 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_178 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_179 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_180 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_181 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_182 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_183 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_184 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_185 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_186 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_187 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_188 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_189 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_190 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_191 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_192 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_193 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_194 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_195 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_196 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_197 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_198 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_199 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_200 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_201 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_202 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_203 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_204 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_205 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_206 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_207 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_208 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_209 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_210 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_213 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_214 | 1.0 | 0.0 | 1.0 |
| HCFINGKG_215 | 0.0 | 1.0 | 0.0 |
| HCFINGKG_216 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HCFINGKG_135 | 6165 | 32691 | False | Siphoviridae | VOG1422, VOG4548, VOG9546, VOG1561, VOG0275, VOG9667, VOG4603, VOG4552, VOG0181, VOG0535, VOG0595, VOG4799, VOG0025, VOG0598, VOG0226, VOG0536, VOG10041, VOG0044, VOG2786, VOG6581, VOG0397, VOG0198, VOG8909, VOG8226, VOG4544, VOG4556, VOG4573, VOG4553, VOG7168, VOG0562, VOG8954 |
| HCFINGKG_206 | 7293 | 17212 | False | Siphoviridae | VOG2602, VOG4602, VOG9667, VOG9667, VOG4552, VOG8241, VOG3549, VOG1878, VOG4600, VOG1309, VOG4799, VOG0189, VOG9996 |
| HCFINGKG_206 | 23296 | 52773 | False | Siphoviridae | VOG1422, VOG0198, VOG3412, VOG0796, VOG10227, VOG0691, VOG0692, VOG9317, VOG4572, VOG5007, VOG0695, VOG0696, VOG0697, VOG0698, VOG10044, VOG0701, VOG8263, VOG4605, VOG4599, VOG4763, VOG5520, VOG8197, VOG4918, VOG0703, VOG3477, VOG9546 |
Phigaro v2.4.0 (Database: Jan. 2024 release)