Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CDFPLGIG_240 | 142473 | 143177 | WalR | 1.39e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| CDFPLGIG_159 | 13891 | 14088 | CspR | 4.13e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CDFPLGIG_10 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_20 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_28 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_39 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_46 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_55 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_63 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_73 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_79 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_87 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_88 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_97 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_104 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_112 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_119 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_126 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_135 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_141 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_151 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_159 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_164 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_165 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_172 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_176 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_185 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_192 | 1.0 | 0.0 | 1.0 |
| CDFPLGIG_201 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_209 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_216 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_219 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_229 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_239 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_240 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_249 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_258 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_267 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_273 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_281 | 1.0 | 0.0 | 1.0 |
| CDFPLGIG_289 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_296 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_304 | 1.0 | 0.0 | 1.0 |
| CDFPLGIG_312 | 1.0 | 0.0 | 1.0 |
| CDFPLGIG_320 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_321 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_331 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_338 | 1.0 | 0.0 | 1.0 |
| CDFPLGIG_347 | 1.0 | 0.0 | 1.0 |
| CDFPLGIG_352 | 1.0 | 0.0 | 1.0 |
| CDFPLGIG_353 | 1.0 | 0.0 | 1.0 |
| CDFPLGIG_354 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_355 | 1.0 | 0.0 | 1.0 |
| CDFPLGIG_356 | 1.0 | 0.0 | 1.0 |
| CDFPLGIG_357 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_358 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_359 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_360 | 1.0 | 0.0 | 1.0 |
| CDFPLGIG_361 | 1.0 | 0.0 | 1.0 |
| CDFPLGIG_362 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_363 | 1.0 | 0.0 | 1.0 |
| CDFPLGIG_364 | 1.0 | 0.0 | 1.0 |
| CDFPLGIG_365 | 1.0 | 0.0 | 1.0 |
| CDFPLGIG_366 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_367 | 1.0 | 0.0 | 1.0 |
| CDFPLGIG_368 | 1.0 | 0.0 | 1.0 |
| CDFPLGIG_370 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_371 | 1.0 | 0.0 | 1.0 |
| CDFPLGIG_372 | 1.0 | 0.0 | 1.0 |
| CDFPLGIG_373 | 1.0 | 0.0 | 1.0 |
| CDFPLGIG_374 | 1.0 | 0.0 | 1.0 |
| CDFPLGIG_375 | 1.0 | 0.0 | 1.0 |
| CDFPLGIG_376 | 1.0 | 0.0 | 1.0 |
| CDFPLGIG_377 | 1.0 | 0.0 | 1.0 |
| CDFPLGIG_378 | 1.0 | 0.0 | 1.0 |
| CDFPLGIG_380 | 1.0 | 0.0 | 1.0 |
| CDFPLGIG_381 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_382 | 1.0 | 0.0 | 1.0 |
| CDFPLGIG_383 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_384 | 1.0 | 0.0 | 1.0 |
| CDFPLGIG_385 | 1.0 | 0.0 | 1.0 |
| CDFPLGIG_386 | 1.0 | 0.0 | 1.0 |
| CDFPLGIG_387 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_388 | 1.0 | 0.0 | 1.0 |
| CDFPLGIG_389 | 1.0 | 0.0 | 1.0 |
| CDFPLGIG_390 | 1.0 | 0.0 | 1.0 |
| CDFPLGIG_392 | 0.0 | 1.0 | 0.0 |
| CDFPLGIG_403 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CDFPLGIG_46 | 75248 | 79754 | False | Unknown | VOG1309, VOG0186, VOG4566, VOG0189, VOG4688 |
| CDFPLGIG_55 | 73872 | 75630 | False | Unknown | VOG8294 |
| CDFPLGIG_63 | 1349 | 26585 | False | Siphoviridae | VOG0796, VOG4544, VOG0720, VOG4564, VOG4555, VOG3434, VOG1887, VOG1322, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4605, VOG4599, VOG6455, VOG0861, VOG7017, VOG0703, VOG4918, VOG0866, VOG1724 |
| CDFPLGIG_97 | 4838 | 15887 | False | Siphoviridae | VOG0209, VOG4586, VOG0207, VOG0205, VOG4568, VOG4556, VOG0202, VOG1886, VOG4581, VOG0195, VOG4841 |
| CDFPLGIG_321 | 54700 | 61248 | False | Siphoviridae | VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205 |
Phigaro v2.4.0 (Database: Jan. 2024 release)