Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KGLIGALG_3 | 46216 | 46410 | CspA | 7.86e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KGLIGALG_1 | 0.0 | 1.0 | 0.0 |
| KGLIGALG_2 | 0.0 | 1.0 | 0.0 |
| KGLIGALG_3 | 0.0 | 1.0 | 0.0 |
| KGLIGALG_4 | 0.0 | 1.0 | 0.0 |
| KGLIGALG_5 | 0.0 | 1.0 | 0.0 |
| KGLIGALG_6 | 0.0 | 1.0 | 0.0 |
| KGLIGALG_7 | 0.0 | 1.0 | 0.0 |
| KGLIGALG_8 | 0.0 | 1.0 | 0.0 |
| KGLIGALG_9 | 0.0 | 1.0 | 0.0 |
| KGLIGALG_10 | 0.0 | 1.0 | 0.0 |
| KGLIGALG_11 | 0.0 | 1.0 | 0.0 |
| KGLIGALG_12 | 0.0 | 1.0 | 0.0 |
| KGLIGALG_13 | 0.0 | 1.0 | 0.0 |
| KGLIGALG_14 | 1.0 | 0.0 | 1.0 |
| KGLIGALG_15 | 0.0 | 1.0 | 0.0 |
| KGLIGALG_16 | 0.0 | 1.0 | 0.0 |
| KGLIGALG_17 | 0.0 | 1.0 | 0.0 |
| KGLIGALG_18 | 0.0 | 1.0 | 0.0 |
| KGLIGALG_19 | 0.0 | 1.0 | 0.0 |
| KGLIGALG_20 | 0.0 | 1.0 | 0.0 |
| KGLIGALG_21 | 0.0 | 1.0 | 0.0 |
| KGLIGALG_22 | 0.0 | 1.0 | 0.0 |
| KGLIGALG_23 | 0.0 | 1.0 | 0.0 |
| KGLIGALG_24 | 0.0 | 1.0 | 0.0 |
| KGLIGALG_25 | 0.0 | 1.0 | 0.0 |
| KGLIGALG_26 | 1.0 | 0.0 | 1.0 |
| KGLIGALG_27 | 0.0 | 1.0 | 0.0 |
| KGLIGALG_28 | 1.0 | 0.0 | 1.0 |
| KGLIGALG_29 | 0.0 | 1.0 | 0.0 |
| KGLIGALG_30 | 1.0 | 0.0 | 1.0 |
| KGLIGALG_32 | 1.0 | 0.0 | 1.0 |
| KGLIGALG_33 | 1.0 | 0.0 | 1.0 |
| KGLIGALG_34 | 0.0 | 1.0 | 0.0 |
| KGLIGALG_45 | 0.0 | 1.0 | 0.0 |
| KGLIGALG_52 | 0.0 | 1.0 | 0.0 |
| KGLIGALG_53 | 0.0 | 1.0 | 0.0 |
| KGLIGALG_54 | 0.0 | 1.0 | 0.0 |
| KGLIGALG_55 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KGLIGALG_14 | 916 | 24980 | False | Siphoviridae | VOG8387, VOG8294, VOG0641, VOG0648, VOG5007, VOG4599, VOG0727, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1319, VOG10914, VOG4564, VOG0720, VOG10227, VOG0796, VOG0198 |
| KGLIGALG_14 | 26955 | 30410 | False | Siphoviridae | VOG4609, VOG4632, VOG6545 |
| KGLIGALG_52 | 54262 | 82838 | True | Siphoviridae | VOG0944, VOG0944, VOG8387, VOG0703, VOG1637, VOG4626, VOG9997, VOG0565, VOG10972, VOG3462, VOG0801, VOG0083, VOG0209, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG4581, VOG4841, VOG0866 |
Phigaro v2.4.0 (Database: Jan. 2024 release)