Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 10 | 10.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MNPOMCCN_22 | 44058 | 42880 | tufA | 0.0 | elongation factor Tu | 85.75 | 99.49 | AHM69299 |
| MNPOMCCN_85 | 20549 | 19044 | atpA | 0.0 | ATP synthase subunit alpha | 80.08 | 100.00 | ABD31377 |
| MNPOMCCN_75 | 7697 | 6828 | pdxS | 1.17e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| MNPOMCCN_29 | 970 | 194 | CodY | 1.03e-128 | nutrient-responsive regulator | 81.85 | 100.00 | ACJ80679 |
| MNPOMCCN_29 | 970 | 194 | codY | 4.94e-125 | global regulator and isoleucine sensor | 80.69 | 100.00 | ASW39076 |
| MNPOMCCN_74 | 27941 | 27372 | ClpP | 5.81e-104 | part of proteolytic complex | 83.68 | 97.44 | BAB94595 |
| MNPOMCCN_32 | 38316 | 39002 | WalR | 7.05e-104 | transcriptional regulatory protein | 80.79 | 97.44 | EPH95667 |
| MNPOMCCN_74 | 127926 | 128318 | spxA1 | 1.02e-72 | redox-responsive transcription factor | 88.55 | 100.00 | AAF21893 |
| MNPOMCCN_74 | 127926 | 128318 | spx | 2.20e-67 | essential gene which is a thiol/oxidative stress sensor | 80.92 | 100.00 | BAB57159 |
| MNPOMCCN_35 | 33807 | 33565 | SpoVG | 8.02e-40 | RNA-binding protein | 82.72 | 79.41 | AAT02994 |
| MNPOMCCN_37 | 35989 | 36186 | CspA | 6.20e-30 | cold shock protein | 83.33 | 100.00 | CAA62903 |
| MNPOMCCN_52 | 46895 | 47089 | CspD | 2.98e-29 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| MNPOMCCN_52 | 46895 | 47092 | CspB | 2.00e-28 | cold shock protein | 80.30 | 100.00 | CAD00094 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MNPOMCCN_1 | 1.0 | 0.0 | 1.0 |
| MNPOMCCN_2 | 1.0 | 0.0 | 1.0 |
| MNPOMCCN_3 | 1.0 | 0.0 | 1.0 |
| MNPOMCCN_4 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_6 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_8 | 1.0 | 0.0 | 1.0 |
| MNPOMCCN_9 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_10 | 1.0 | 0.0 | 1.0 |
| MNPOMCCN_11 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_13 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_14 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_21 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_22 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_23 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_24 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_25 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_26 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_27 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_28 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_29 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_30 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_31 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_32 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_33 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_34 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_35 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_36 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_37 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_38 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_39 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_40 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_41 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_42 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_43 | 1.0 | 0.0 | 1.0 |
| MNPOMCCN_44 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_45 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_46 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_47 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_48 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_49 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_50 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_51 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_52 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_53 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_54 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_55 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_56 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_57 | 1.0 | 0.0 | 1.0 |
| MNPOMCCN_58 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_59 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_60 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_61 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_62 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_63 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_64 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_65 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_66 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_67 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_68 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_69 | 1.0 | 0.0 | 1.0 |
| MNPOMCCN_70 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_71 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_72 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_73 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_74 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_75 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_76 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_77 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_78 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_79 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_80 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_81 | 1.0 | 0.0 | 1.0 |
| MNPOMCCN_82 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_83 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_84 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_85 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_86 | 1.0 | 0.0 | 1.0 |
| MNPOMCCN_87 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_88 | 1.0 | 0.0 | 1.0 |
| MNPOMCCN_89 | 1.0 | 0.0 | 1.0 |
| MNPOMCCN_90 | 1.0 | 0.0 | 1.0 |
| MNPOMCCN_91 | 1.0 | 0.0 | 1.0 |
| MNPOMCCN_92 | 1.0 | 0.0 | 1.0 |
| MNPOMCCN_93 | 1.0 | 0.0 | 1.0 |
| MNPOMCCN_94 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_95 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_96 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_97 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_98 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_99 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_100 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_101 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_102 | 1.0 | 0.0 | 1.0 |
| MNPOMCCN_103 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_104 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_105 | 1.0 | 0.0 | 1.0 |
| MNPOMCCN_106 | 1.0 | 0.0 | 1.0 |
| MNPOMCCN_107 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_108 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_109 | 1.0 | 0.0 | 1.0 |
| MNPOMCCN_110 | 1.0 | 0.0 | 1.0 |
| MNPOMCCN_111 | 1.0 | 0.0 | 1.0 |
| MNPOMCCN_112 | 1.0 | 0.0 | 1.0 |
| MNPOMCCN_113 | 1.0 | 0.0 | 1.0 |
| MNPOMCCN_114 | 1.0 | 0.0 | 1.0 |
| MNPOMCCN_115 | 1.0 | 0.0 | 1.0 |
| MNPOMCCN_116 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_117 | 0.0 | 1.0 | 0.0 |
| MNPOMCCN_118 | 1.0 | 0.0 | 1.0 |
| MNPOMCCN_119 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MNPOMCCN_33 | 18879 | 50340 | False | Siphoviridae | VOG4660, VOG6373, VOG4619, VOG0801, VOG6163, VOG4557, VOG5660, VOG3888, VOG1581, VOG4711, VOG3210, VOG4568, VOG7708, VOG7407, VOG0611, VOG0198, VOG8445, VOG3553, VOG1298, VOG6440, VOG0195, VOG0536, VOG0397, VOG9996, VOG0025, VOG9600, VOG4855, VOG1309, VOG4600, VOG1878, VOG3549, VOG8241, VOG4552, VOG9667, VOG9667 |
| MNPOMCCN_63 | 20076 | 61140 | False | Siphoviridae | VOG6778, VOG0275, VOG4602, VOG4548, VOG0982, VOG9858, VOG9667, VOG11075, VOG6495, VOG0181, VOG1878, VOG4690, VOG8647, VOG0226, VOG4552, VOG0198, VOG0275, VOG4841, VOG4581, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0704, VOG4586, VOG5852, VOG6163, VOG0801, VOG3462, VOG8438, VOG6243, VOG8580, VOG0753, VOG0136, VOG4918 |
Phigaro v2.4.0 (Database: Jan. 2024 release)