Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
MOHMDLIP_4295866296570WalR2.05e-114transcriptional regulatory protein84.25100.00EPH95667
MOHMDLIP_3154736154542CspR1.70e-29cold shock protein84.6198.48AAO82613
MOHMDLIP_3154736154539CspA2.61e-29cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
MOHMDLIP_328311784repUS64954 / 95497.90JN601038
MOHMDLIP_2463997328rep28930 / 93097.74CP003162
MOHMDLIP_3121642277Col440I114 / 11494.74CP023920.1
MOHMDLIP_2025193448repUS73945 / 110180.11CP002654

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
MOHMDLIP_10.01.00.0
MOHMDLIP_20.01.00.0
MOHMDLIP_30.01.00.0
MOHMDLIP_40.01.00.0
MOHMDLIP_50.01.00.0
MOHMDLIP_60.01.00.0
MOHMDLIP_70.01.00.0
MOHMDLIP_80.01.00.0
MOHMDLIP_90.01.00.0
MOHMDLIP_100.01.00.0
MOHMDLIP_110.01.00.0
MOHMDLIP_120.01.00.0
MOHMDLIP_130.01.00.0
MOHMDLIP_141.00.01.0
MOHMDLIP_151.00.01.0
MOHMDLIP_161.00.01.0
MOHMDLIP_170.01.00.0
MOHMDLIP_181.00.01.0
MOHMDLIP_190.01.00.0
MOHMDLIP_201.00.01.0
MOHMDLIP_211.00.01.0
MOHMDLIP_221.00.01.0
MOHMDLIP_231.00.01.0
MOHMDLIP_241.00.01.0
MOHMDLIP_251.00.01.0
MOHMDLIP_261.00.01.0
MOHMDLIP_270.01.00.0
MOHMDLIP_281.00.01.0
MOHMDLIP_291.00.01.0
MOHMDLIP_311.00.01.0
MOHMDLIP_321.00.01.0
MOHMDLIP_331.00.01.0
MOHMDLIP_351.00.01.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
MOHMDLIP_2269034279243FalseSiphoviridaeVOG4632, VOG4609, VOG6414, VOG0205, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568
MOHMDLIP_774491100223FalseSiphoviridaeVOG0044, VOG3643, VOG1049, VOG0198, VOG3381, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG9583, VOG0724, VOG0799, VOG0725, VOG6163, VOG4633, VOG4599, VOG4619, VOG4856, VOG9640, VOG0804, VOG4705, VOG8294, VOG1637, VOG0054, VOG0713
MOHMDLIP_8673040537FalseSiphoviridaeVOG0685, VOG0283, VOG0226, VOG0514, VOG4566, VOG6005, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG6163, VOG4605, VOG4599, VOG10957, VOG8870, VOG9998, VOG0753

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements