Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HBPPLLON_77 | 1 | 1065 | Escherichia coli EF-Tu mutants conferring resistance to Pulvomycin | ARO:3003369 | Ecol_EFTu_PLV | 100.00 | 86.80 | AE014075.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HBPPLLON_4 | 57679 | 57873 | CspA | 7.55e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HBPPLLON_54 | 2470 | 2583 | Col440I | 114 / 114 | 94.74 | CP023920.1 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HBPPLLON_1 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_2 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_3 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_4 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_5 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_6 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_7 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_8 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_9 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_10 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_11 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_12 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_13 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_14 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_15 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_16 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_17 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_18 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_19 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_20 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_21 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_22 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_23 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_24 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_25 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_26 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_27 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_28 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_29 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_30 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_31 | 1.0 | 0.0 | 1.0 |
| HBPPLLON_32 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_33 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_34 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_35 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_36 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_37 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_38 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_39 | 1.0 | 0.0 | 1.0 |
| HBPPLLON_40 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_41 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_42 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_43 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_44 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_45 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_46 | 1.0 | 0.0 | 1.0 |
| HBPPLLON_47 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_48 | 1.0 | 0.0 | 1.0 |
| HBPPLLON_49 | 1.0 | 0.0 | 1.0 |
| HBPPLLON_50 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_53 | 1.0 | 0.0 | 1.0 |
| HBPPLLON_54 | 1.0 | 0.0 | 1.0 |
| HBPPLLON_55 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_56 | 1.0 | 0.0 | 1.0 |
| HBPPLLON_57 | 1.0 | 0.0 | 1.0 |
| HBPPLLON_58 | 1.0 | 0.0 | 1.0 |
| HBPPLLON_59 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_60 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_61 | 1.0 | 0.0 | 1.0 |
| HBPPLLON_63 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_64 | 1.0 | 0.0 | 1.0 |
| HBPPLLON_66 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_68 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_69 | 1.0 | 0.0 | 1.0 |
| HBPPLLON_70 | 1.0 | 0.0 | 1.0 |
| HBPPLLON_71 | 1.0 | 0.0 | 1.0 |
| HBPPLLON_72 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_73 | 1.0 | 0.0 | 1.0 |
| HBPPLLON_74 | 1.0 | 0.0 | 1.0 |
| HBPPLLON_75 | 1.0 | 0.0 | 1.0 |
| HBPPLLON_76 | 1.0 | 0.0 | 1.0 |
| HBPPLLON_77 | 1.0 | 0.0 | 1.0 |
| HBPPLLON_78 | 0.0 | 1.0 | 0.0 |
| HBPPLLON_79 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HBPPLLON_1 | 157911 | 168533 | False | Siphoviridae | VOG3557, VOG4821, VOG0982, VOG0862, VOG8520, VOG2147, VOG3478, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609 |
| HBPPLLON_1 | 170168 | 196644 | False | Siphoviridae | VOG3468, VOG0198, VOG1323, VOG0866, VOG4841, VOG4581, VOG1886, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG7248, VOG0207, VOG0209, VOG4545, VOG0801, VOG3462, VOG10972, VOG0565, VOG9997, VOG4626 |
| HBPPLLON_17 | 3904 | 11076 | True | Siphoviridae | VOG4553, VOG0204, VOG4589, VOG0641, VOG9409, VOG0221, VOG0221 |
Phigaro v2.4.0 (Database: Jan. 2024 release)