Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FBIBCCGH_11 | 238735 | 238031 | WalR | 1.70e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| FBIBCCGH_43 | 7206 | 7400 | CspR | 4.55e-31 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| FBIBCCGH_43 | 7206 | 7403 | CspA | 6.98e-31 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| FBIBCCGH_41 | 1341 | 2276 | rep28 | 936 / 936 | 100.00 | CP005948 |
| FBIBCCGH_78 | 940 | 1896 | repUS64 | 958 / 954 | 92.59 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FBIBCCGH_1 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_2 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_3 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_4 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_5 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_6 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_7 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_8 | 1.0 | 0.0 | 1.0 |
| FBIBCCGH_9 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_10 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_11 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_12 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_13 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_14 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_15 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_16 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_17 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_18 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_19 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_20 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_21 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_22 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_23 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_24 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_25 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_26 | 1.0 | 0.0 | 1.0 |
| FBIBCCGH_27 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_28 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_29 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_30 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_31 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_32 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_33 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_34 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_35 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_36 | 1.0 | 0.0 | 1.0 |
| FBIBCCGH_37 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_38 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_39 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_40 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_41 | 1.0 | 0.0 | 1.0 |
| FBIBCCGH_42 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_43 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_44 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_45 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_46 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_47 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_48 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_49 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_50 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_51 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_52 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_53 | 1.0 | 0.0 | 1.0 |
| FBIBCCGH_54 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_55 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_56 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_57 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_58 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_59 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_60 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_61 | 1.0 | 0.0 | 1.0 |
| FBIBCCGH_62 | 1.0 | 0.0 | 1.0 |
| FBIBCCGH_63 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_64 | 1.0 | 0.0 | 1.0 |
| FBIBCCGH_65 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_66 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_67 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_68 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_70 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_71 | 1.0 | 0.0 | 1.0 |
| FBIBCCGH_72 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_73 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_74 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_75 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_76 | 1.0 | 0.0 | 1.0 |
| FBIBCCGH_77 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_78 | 1.0 | 0.0 | 1.0 |
| FBIBCCGH_79 | 1.0 | 0.0 | 1.0 |
| FBIBCCGH_80 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_81 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_83 | 1.0 | 0.0 | 1.0 |
| FBIBCCGH_84 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_86 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_88 | 0.0 | 1.0 | 0.0 |
| FBIBCCGH_97 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FBIBCCGH_32 | 1243 | 19247 | False | Siphoviridae | VOG4856, VOG4619, VOG0801, VOG1323, VOG0725, VOG0799, VOG1321, VOG5660, VOG1320, VOG4713, VOG0694, VOG4555, VOG4564, VOG0720, VOG10227 |
| FBIBCCGH_88 | 1242 | 35831 | False | Siphoviridae | VOG0602, VOG9888, VOG8917, VOG9997, VOG3498, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG9281, VOG4673, VOG3643, VOG7416, VOG0044, VOG10015, VOG1298, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG9667, VOG4548, VOG0321, VOG8925, VOG0181, VOG8222 |
Phigaro v2.4.0 (Database: Jan. 2024 release)