Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 2 | 7 | 7.35 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BCKPOJNH_10 | 410275 | 411651 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 87.07 | 100.00 | X08034 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BCKPOJNH_10 | 410275 | 411645 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.87 | 99.78 | WP_003242953.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| BCKPOJNH_9 | 545406 | 546587 | capB | 0.0 | Capsule | Immune modulation | 82.63 | 99.66 | NP_391471 |
| BCKPOJNH_9 | 544942 | 545391 | capC | 8.37e-116 | Capsule | Immune modulation | 83.81 | 99.78 | NP_391470 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BCKPOJNH_6 | 31778 | 32914 | tufA | 0.0 | elongation factor Tu | 86.54 | 95.69 | AHM69299 |
| BCKPOJNH_4 | 7451 | 8320 | pdxS | 1.09e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| BCKPOJNH_11 | 413899 | 413123 | CodY | 7.99e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| BCKPOJNH_5 | 200938 | 201330 | spxA1 | 1.12e-69 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| BCKPOJNH_1 | 70561 | 70364 | CspA | 2.31e-31 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| BCKPOJNH_7 | 15311 | 15505 | CspB | 1.17e-27 | cold shock protein | 84.61 | 98.48 | CAD00094 |
| BCKPOJNH_1 | 70561 | 70367 | CspR | 3.02e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| BCKPOJNH_9 | 143417 | 142545 | lipA (SAUSA300_0829) | 3.38e-162 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BCKPOJNH_1 | 0.0 | 1.0 | 0.0 |
| BCKPOJNH_2 | 0.0 | 1.0 | 0.0 |
| BCKPOJNH_4 | 0.0 | 1.0 | 0.0 |
| BCKPOJNH_5 | 0.0 | 1.0 | 0.0 |
| BCKPOJNH_6 | 0.0 | 1.0 | 0.0 |
| BCKPOJNH_7 | 0.0 | 1.0 | 0.0 |
| BCKPOJNH_8 | 0.0 | 1.0 | 0.0 |
| BCKPOJNH_9 | 0.0 | 1.0 | 0.0 |
| BCKPOJNH_10 | 0.0 | 1.0 | 0.0 |
| BCKPOJNH_11 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BCKPOJNH_5 | 372297 | 398643 | False | Myoviridae | VOG9667, VOG0189, VOG4861, VOG5447, VOG0796, VOG10227, VOG4773, VOG4685, VOG0749, VOG10055, VOG3890, VOG3891, VOG3892, VOG6163, VOG4865, VOG4885, VOG3894, VOG4550, VOG4691, VOG4862, VOG7718, VOG3390, VOG4705 |
| BCKPOJNH_9 | 374418 | 400973 | False | Siphoviridae | VOG1561, VOG9222, VOG0136, VOG4707, VOG5221, VOG4705, VOG3390, VOG4612, VOG4660, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG4581, VOG4841, VOG0531, VOG2124 |
| BCKPOJNH_10 | 280620 | 313549 | False | Siphoviridae | VOG7438, VOG1047, VOG0021, VOG1565, VOG0026, VOG4609, VOG0327, VOG4548, VOG0198, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG4553, VOG5361, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4772, VOG4660, VOG4612, VOG3390, VOG7896, VOG0641, VOG4574 |
| BCKPOJNH_10 | 971146 | 972999 | False | Unknown | VOG4566, VOG0189 |
| BCKPOJNH_10 | 975336 | 1001935 | False | Siphoviridae | VOG4567, VOG8909, VOG0198, VOG0275, VOG7888, VOG3254, VOG4841, VOG0713, VOG4581, VOG1886, VOG3607, VOG4556, VOG4568, VOG4553, VOG5361, VOG0204, VOG1266, VOG0539, VOG0704, VOG4586, VOG0541, VOG5910, VOG0801, VOG4772, VOG4660 |
| BCKPOJNH_11 | 13125 | 40736 | False | Siphoviridae | VOG4567, VOG8909, VOG0198, VOG0275, VOG7888, VOG3254, VOG4841, VOG0713, VOG4581, VOG1886, VOG3607, VOG4556, VOG4568, VOG4553, VOG5361, VOG0204, VOG1266, VOG0539, VOG0704, VOG4586, VOG0541, VOG5910, VOG0801, VOG4772, VOG4660, VOG4612, VOG3390, VOG7896 |
Phigaro v2.4.0 (Database: Jan. 2024 release)