Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HGAMFACD_1 | 155094 | 155798 | WalR | 2.14e-111 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HGAMFACD_1 | 2893342 | 2894402 | repUS73 | 1061 / 1101 | 97.27 | CP002654 |
| HGAMFACD_34 | 457 | 1518 | repUS74 | 1063 / 1062 | 95.77 | CP000424 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HGAMFACD_1 | 0.0 | 1.0 | 0.0 |
| HGAMFACD_3 | 1.0 | 0.0 | 1.0 |
| HGAMFACD_5 | 1.0 | 0.0 | 1.0 |
| HGAMFACD_7 | 1.0 | 0.0 | 1.0 |
| HGAMFACD_10 | 1.0 | 0.0 | 1.0 |
| HGAMFACD_11 | 1.0 | 0.0 | 1.0 |
| HGAMFACD_15 | 1.0 | 0.0 | 1.0 |
| HGAMFACD_18 | 0.0 | 1.0 | 0.0 |
| HGAMFACD_23 | 1.0 | 0.0 | 1.0 |
| HGAMFACD_24 | 1.0 | 0.0 | 1.0 |
| HGAMFACD_27 | 1.0 | 0.0 | 1.0 |
| HGAMFACD_34 | 1.0 | 0.0 | 1.0 |
| HGAMFACD_36 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HGAMFACD_1 | 78126 | 88993 | False | Siphoviridae | VOG0204, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205, VOG4606, VOG4632, VOG1581 |
| HGAMFACD_1 | 1011781 | 1024567 | True | Inoviridae | VOG1020, VOG6753, VOG0052, VOG4548, VOG5088, VOG0013, VOG0275, VOG0275 |
| HGAMFACD_1 | 2483320 | 2491381 | False | Siphoviridae | VOG0198, VOG3307, VOG5317, VOG5280, VOG0982, VOG0189, VOG4799 |
Phigaro v2.4.0 (Database: Jan. 2024 release)