Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GHKEDNAG_180 | 63414 | 64118 | WalR | 7.06e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| GHKEDNAG_158 | 133414 | 133220 | CspR | 6.26e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| GHKEDNAG_158 | 133414 | 133217 | CspA | 9.60e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GHKEDNAG_183 | 752 | 1687 | rep28 | 936 / 936 | 100.00 | CP005948 |
| GHKEDNAG_172 | 6545 | 7447 | rep38 | 903 / 903 | 99.22 | CP005943 |
| GHKEDNAG_184 | 2372 | 3508 | rep32 | 1157 / 1161 | 83.06 | AL592102 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GHKEDNAG_1 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_2 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_3 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_4 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_5 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_6 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_7 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_8 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_9 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_10 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_11 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_13 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_14 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_15 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_16 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_24 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_35 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_46 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_57 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_68 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_79 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_90 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_101 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_112 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_113 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_124 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_135 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_140 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_141 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_142 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_143 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_144 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_145 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_146 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_147 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_148 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_149 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_150 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_151 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_152 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_153 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_154 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_155 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_156 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_157 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_158 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_159 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_160 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_161 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_162 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_163 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_164 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_165 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_166 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_167 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_168 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_169 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_170 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_171 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_172 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_173 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_174 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_175 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_176 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_177 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_178 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_179 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_180 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_181 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_182 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_183 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_184 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_185 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_186 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_187 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_188 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_189 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_190 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_191 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_192 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_193 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_194 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_195 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_196 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_197 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_198 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_199 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_200 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_201 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_202 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_203 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_204 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_205 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_206 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_207 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_209 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_210 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_211 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_212 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_213 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_214 | 0.0 | 1.0 | 0.0 |
| GHKEDNAG_215 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_216 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_217 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_218 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_219 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_220 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_221 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_222 | 1.0 | 0.0 | 1.0 |
| GHKEDNAG_223 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GHKEDNAG_154 | 17118 | 29607 | False | Siphoviridae | VOG0044, VOG9671, VOG0198, VOG4841, VOG2558, VOG0468, VOG4581, VOG1886, VOG7454, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207 |
| GHKEDNAG_191 | 1846 | 36021 | False | Siphoviridae | VOG10065, VOG4705, VOG4334, VOG8438, VOG9657, VOG3463, VOG4619, VOG0801, VOG4910, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG1329, VOG4555, VOG0692, VOG0691, VOG4544, VOG0796, VOG1183, VOG5616, VOG0143, VOG1714, VOG0198, VOG0044, VOG11003, VOG5039, VOG4693, VOG9438, VOG0226, VOG0283 |
Phigaro v2.4.0 (Database: Jan. 2024 release)