Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LLHALKMO_2 | 19392 | 18685 | WalR | 1.81e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| LLHALKMO_5 | 20204 | 20401 | CspR | 7.02e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| LLHALKMO_5 | 20204 | 20398 | CspA | 3.42e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LLHALKMO_1 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_2 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_3 | 1.0 | 0.0 | 1.0 |
| LLHALKMO_4 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_5 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_6 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_7 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_8 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_9 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_10 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_11 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_12 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_13 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_14 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_15 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_16 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_17 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_18 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_19 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_20 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_21 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_22 | 1.0 | 0.0 | 1.0 |
| LLHALKMO_23 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_24 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_25 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_26 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_27 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_28 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_29 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_30 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_31 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_32 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_33 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_34 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_35 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_36 | 1.0 | 0.0 | 1.0 |
| LLHALKMO_37 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_38 | 1.0 | 0.0 | 1.0 |
| LLHALKMO_39 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_40 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_41 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_42 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_43 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_44 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_45 | 1.0 | 0.0 | 1.0 |
| LLHALKMO_46 | 1.0 | 0.0 | 1.0 |
| LLHALKMO_47 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_48 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_49 | 1.0 | 0.0 | 1.0 |
| LLHALKMO_50 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_51 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_52 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_53 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_54 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_55 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_56 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_57 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_58 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_59 | 1.0 | 0.0 | 1.0 |
| LLHALKMO_60 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_61 | 1.0 | 0.0 | 1.0 |
| LLHALKMO_62 | 1.0 | 0.0 | 1.0 |
| LLHALKMO_63 | 1.0 | 0.0 | 1.0 |
| LLHALKMO_64 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_65 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_66 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_67 | 1.0 | 0.0 | 1.0 |
| LLHALKMO_68 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_70 | 1.0 | 0.0 | 1.0 |
| LLHALKMO_71 | 1.0 | 0.0 | 1.0 |
| LLHALKMO_72 | 1.0 | 0.0 | 1.0 |
| LLHALKMO_73 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_76 | 1.0 | 0.0 | 1.0 |
| LLHALKMO_77 | 1.0 | 0.0 | 1.0 |
| LLHALKMO_78 | 0.0 | 1.0 | 0.0 |
| LLHALKMO_85 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LLHALKMO_3 | 15853 | 31738 | True | Myoviridae / Siphoviridae | VOG3307, VOG4548, VOG1024, VOG5014, VOG0327, VOG0322, VOG6545, VOG4577, VOG4606, VOG3468, VOG5998, VOG5562, VOG0275, VOG0275, VOG10418, VOG0275, VOG0195 |
| LLHALKMO_3 | 34565 | 49114 | False | Siphoviridae | VOG6409, VOG7894, VOG4841, VOG4581, VOG1886, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG5852 |
| LLHALKMO_13 | 15974 | 18001 | False | Unknown | VOG7438 |
| LLHALKMO_34 | 3505 | 7128 | False | Unknown | VOG1886, VOG4581, VOG4841 |
| LLHALKMO_56 | 9583 | 38614 | False | Siphoviridae | VOG0641, VOG9997, VOG10944, VOG4599, VOG0727, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG4572, VOG10914, VOG4564, VOG0720, VOG10227, VOG0796, VOG1637, VOG0198, VOG7235, VOG0637, VOG0637, VOG5545, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321 |
Phigaro v2.4.0 (Database: Jan. 2024 release)