Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JGIBKOJA_100 | 4781 | 6718 | tet(W) | ARO:3000194 | tet(W) | 96.55 | 100.94 | AJ222769.3 |
| JGIBKOJA_134 | 2509 | 2994 | lnuA | ARO:3002835 | lnuA | 97.52 | 100.00 | M14039.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JGIBKOJA_100 | 4806 | 6718 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.85 | 99.64 | FN396364 |
| JGIBKOJA_134 | 2509 | 2994 | lnu(A) | Lincomycin | 98.77 | 100.00 | M14039 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JGIBKOJA_134 | 2512 | 2994 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | EXACTX | 100.00 | 100.00 | WP_001829870.1 |
| JGIBKOJA_100 | 4805 | 6718 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.69 | 99.84 | WP_003672618.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JGIBKOJA_62 | 53293 | 53487 | CspA | 1.14e-28 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JGIBKOJA_77 | 14401 | 15439 | repUS67 | 1040 / 1039 | 97.88 | CP006012 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JGIBKOJA_1 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_2 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_3 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_4 | 1.0 | 0.0 | 1.0 |
| JGIBKOJA_5 | 1.0 | 0.0 | 1.0 |
| JGIBKOJA_6 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_7 | 1.0 | 0.0 | 1.0 |
| JGIBKOJA_9 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_10 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_11 | 1.0 | 0.0 | 1.0 |
| JGIBKOJA_12 | 1.0 | 0.0 | 1.0 |
| JGIBKOJA_13 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_14 | 1.0 | 0.0 | 1.0 |
| JGIBKOJA_15 | 1.0 | 0.0 | 1.0 |
| JGIBKOJA_16 | 1.0 | 0.0 | 1.0 |
| JGIBKOJA_17 | 1.0 | 0.0 | 1.0 |
| JGIBKOJA_19 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_20 | 1.0 | 0.0 | 1.0 |
| JGIBKOJA_21 | 1.0 | 0.0 | 1.0 |
| JGIBKOJA_22 | 1.0 | 0.0 | 1.0 |
| JGIBKOJA_23 | 1.0 | 0.0 | 1.0 |
| JGIBKOJA_24 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_35 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_45 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_46 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_47 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_48 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_49 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_50 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_51 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_52 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_53 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_54 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_55 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_56 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_57 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_58 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_59 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_60 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_61 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_62 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_63 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_64 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_65 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_66 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_67 | 1.0 | 0.0 | 1.0 |
| JGIBKOJA_68 | 1.0 | 0.0 | 1.0 |
| JGIBKOJA_69 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_70 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_71 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_72 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_73 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_74 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_75 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_76 | 1.0 | 0.0 | 1.0 |
| JGIBKOJA_77 | 1.0 | 0.0 | 1.0 |
| JGIBKOJA_78 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_79 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_80 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_81 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_82 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_83 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_84 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_85 | 1.0 | 0.0 | 1.0 |
| JGIBKOJA_86 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_87 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_88 | 1.0 | 0.0 | 1.0 |
| JGIBKOJA_89 | 1.0 | 0.0 | 1.0 |
| JGIBKOJA_90 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_91 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_92 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_93 | 1.0 | 0.0 | 1.0 |
| JGIBKOJA_94 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_95 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_96 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_97 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_98 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_99 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_100 | 1.0 | 0.0 | 1.0 |
| JGIBKOJA_101 | 1.0 | 0.0 | 1.0 |
| JGIBKOJA_102 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_103 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_104 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_105 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_106 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_107 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_108 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_109 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_110 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_111 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_112 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_113 | 1.0 | 0.0 | 1.0 |
| JGIBKOJA_114 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_115 | 1.0 | 0.0 | 1.0 |
| JGIBKOJA_116 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_117 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_118 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_119 | 1.0 | 0.0 | 1.0 |
| JGIBKOJA_120 | 1.0 | 0.0 | 1.0 |
| JGIBKOJA_121 | 1.0 | 0.0 | 1.0 |
| JGIBKOJA_122 | 1.0 | 0.0 | 1.0 |
| JGIBKOJA_123 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_124 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_125 | 1.0 | 0.0 | 1.0 |
| JGIBKOJA_126 | 1.0 | 0.0 | 1.0 |
| JGIBKOJA_127 | 1.0 | 0.0 | 1.0 |
| JGIBKOJA_128 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_129 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_130 | 1.0 | 0.0 | 1.0 |
| JGIBKOJA_131 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_132 | 1.0 | 0.0 | 1.0 |
| JGIBKOJA_133 | 1.0 | 0.0 | 1.0 |
| JGIBKOJA_134 | 1.0 | 0.0 | 1.0 |
| JGIBKOJA_135 | 1.0 | 0.0 | 1.0 |
| JGIBKOJA_136 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_137 | 0.0 | 1.0 | 0.0 |
| JGIBKOJA_138 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JGIBKOJA_1 | 28975 | 84507 | True | Siphoviridae | VOG0686, VOG7111, VOG0198, VOG4357, VOG1026, VOG0866, VOG0195, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG9471, VOG6163, VOG0801, VOG3462, VOG4887, VOG5008, VOG8917, VOG0703, VOG4615, VOG7176, VOG1198, VOG0275, VOG0275, VOG10077, VOG4602, VOG8520, VOG8520, VOG8214, VOG6459, VOG9469, VOG0707, VOG3478, VOG7812, VOG5692, VOG4955, VOG0226, VOG0514, VOG4799, VOG8318, VOG9078, VOG0686, VOG0686, VOG0638, VOG1183, VOG4693, VOG5474, VOG6495 |
| JGIBKOJA_1 | 107389 | 134932 | False | Siphoviridae | VOG0866, VOG4841, VOG4581, VOG4544, VOG1345, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG4545, VOG0801, VOG3462, VOG3463, VOG4856, VOG9896, VOG4334, VOG4705, VOG4868, VOG0641, VOG0703, VOG4824, VOG9091 |
| JGIBKOJA_2 | 4331 | 33954 | False | Siphoviridae | VOG2228, VOG1302, VOG0321, VOG8222, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG3307, VOG0713, VOG3307, VOG0198, VOG8946, VOG0796, VOG10227, VOG0720, VOG4564, VOG7533, VOG4555, VOG1319, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4633, VOG6163, VOG5008 |
| JGIBKOJA_63 | 9269 | 13275 | False | Siphoviridae | VOG8353, VOG10618, VOG0650, VOG2687, VOG9667, VOG0275 |
| JGIBKOJA_117 | 28410 | 54111 | False | Siphoviridae | VOG4606, VOG0198, VOG4570, VOG1345, VOG4841, VOG4581, VOG1886, VOG4556, VOG4568, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG0801, VOG10972, VOG4856, VOG1637, VOG0054 |
Phigaro v2.4.0 (Database: Jan. 2024 release)