Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OGAFCLPB_34 | 134537 | 138106 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 93.50 | 100.25 | NC_008618.1 |
| OGAFCLPB_11 | 27302 | 29221 | tet(W) | ARO:3000194 | tet(W) | 97.97 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OGAFCLPB_11 | 27302 | 29221 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.91 | 100.00 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OGAFCLPB_11 | 27305 | 29221 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.22 | 100.00 | WP_033493020.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OGAFCLPB_1 | 0.0 | 1.0 | 0.0 |
| OGAFCLPB_2 | 0.0 | 1.0 | 0.0 |
| OGAFCLPB_3 | 0.0 | 1.0 | 0.0 |
| OGAFCLPB_4 | 0.0 | 1.0 | 0.0 |
| OGAFCLPB_5 | 0.0 | 1.0 | 0.0 |
| OGAFCLPB_6 | 0.0 | 1.0 | 0.0 |
| OGAFCLPB_7 | 0.0 | 1.0 | 0.0 |
| OGAFCLPB_8 | 0.0 | 1.0 | 0.0 |
| OGAFCLPB_9 | 0.0 | 1.0 | 0.0 |
| OGAFCLPB_10 | 0.0 | 1.0 | 0.0 |
| OGAFCLPB_11 | 0.0 | 1.0 | 0.0 |
| OGAFCLPB_12 | 0.0 | 1.0 | 0.0 |
| OGAFCLPB_13 | 1.0 | 0.0 | 1.0 |
| OGAFCLPB_14 | 0.0 | 1.0 | 0.0 |
| OGAFCLPB_15 | 0.0 | 1.0 | 0.0 |
| OGAFCLPB_16 | 0.0 | 1.0 | 0.0 |
| OGAFCLPB_17 | 0.0 | 1.0 | 0.0 |
| OGAFCLPB_18 | 0.0 | 1.0 | 0.0 |
| OGAFCLPB_19 | 0.0 | 1.0 | 0.0 |
| OGAFCLPB_20 | 0.0 | 1.0 | 0.0 |
| OGAFCLPB_21 | 0.0 | 1.0 | 0.0 |
| OGAFCLPB_22 | 0.0 | 1.0 | 0.0 |
| OGAFCLPB_23 | 0.0 | 1.0 | 0.0 |
| OGAFCLPB_25 | 1.0 | 0.0 | 1.0 |
| OGAFCLPB_26 | 1.0 | 0.0 | 1.0 |
| OGAFCLPB_27 | 1.0 | 0.0 | 1.0 |
| OGAFCLPB_28 | 0.0 | 1.0 | 0.0 |
| OGAFCLPB_34 | 0.0 | 1.0 | 0.0 |
| OGAFCLPB_36 | 0.0 | 1.0 | 0.0 |
| OGAFCLPB_37 | 0.0 | 1.0 | 0.0 |
| OGAFCLPB_38 | 0.0 | 1.0 | 0.0 |
| OGAFCLPB_39 | 0.0 | 1.0 | 0.0 |
| OGAFCLPB_40 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OGAFCLPB_23 | 123076 | 132700 | True | Myoviridae | VOG4606, VOG4357, VOG1026, VOG3594, VOG0822 |
Phigaro v2.4.0 (Database: Jan. 2024 release)