Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 10 | 10.20 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LEOBILOC_52 | 406 | 1620 | mef(A) | Erythromycin, Azithromycin | 94.24 | 99.75 | AF227520 |
| LEOBILOC_52 | 1746 | 3196 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 92.90 | 99.11 | AF274302 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LEOBILOC_52 | 406 | 1629 | mef(A) | macrolide efflux MFS transporter Mef(A) | EXACTX | 100.00 | 100.00 | WP_012102963.1 |
| LEOBILOC_52 | 1746 | 3200 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 92.99 | 99.59 | WP_000420313.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LEOBILOC_50 | 33035 | 34213 | tufA | 0.0 | elongation factor Tu | 85.75 | 99.49 | AHM69299 |
| LEOBILOC_96 | 61174 | 59669 | atpA | 0.0 | ATP synthase subunit alpha | 80.08 | 100.00 | ABD31377 |
| LEOBILOC_105 | 5100 | 5969 | pdxS | 1.68e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| LEOBILOC_9 | 56327 | 57103 | CodY | 1.03e-128 | nutrient-responsive regulator | 81.85 | 100.00 | ACJ80679 |
| LEOBILOC_9 | 56327 | 57103 | codY | 4.96e-125 | global regulator and isoleucine sensor | 80.69 | 100.00 | ASW39076 |
| LEOBILOC_12 | 127735 | 127166 | ClpP | 8.54e-104 | part of proteolytic complex | 83.68 | 97.44 | BAB94595 |
| LEOBILOC_56 | 73937 | 73251 | WalR | 1.41e-103 | transcriptional regulatory protein | 80.79 | 97.44 | EPH95667 |
| LEOBILOC_8 | 6515 | 6907 | spxA1 | 8.34e-74 | redox-responsive transcription factor | 88.55 | 100.00 | AAF21893 |
| LEOBILOC_8 | 6515 | 6907 | spx | 1.80e-68 | essential gene which is a thiol/oxidative stress sensor | 80.92 | 100.00 | BAB57159 |
| LEOBILOC_36 | 17124 | 17366 | SpoVG | 7.91e-40 | RNA-binding protein | 82.72 | 79.41 | AAT02994 |
| LEOBILOC_49 | 2456 | 2653 | CspA | 4.63e-31 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| LEOBILOC_85 | 108096 | 107902 | CspD | 3.35e-29 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| LEOBILOC_85 | 108096 | 107899 | CspB | 2.25e-28 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| LEOBILOC_49 | 2456 | 2650 | CspR | 8.58e-28 | cold shock protein | 81.54 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LEOBILOC_1 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_2 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_3 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_4 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_6 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_7 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_8 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_9 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_10 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_11 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_12 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_13 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_14 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_15 | 1.0 | 0.0 | 1.0 |
| LEOBILOC_16 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_17 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_18 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_20 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_21 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_22 | 1.0 | 0.0 | 1.0 |
| LEOBILOC_23 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_25 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_26 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_27 | 1.0 | 0.0 | 1.0 |
| LEOBILOC_28 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_29 | 1.0 | 0.0 | 1.0 |
| LEOBILOC_30 | 1.0 | 0.0 | 1.0 |
| LEOBILOC_31 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_32 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_33 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_34 | 1.0 | 0.0 | 1.0 |
| LEOBILOC_35 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_36 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_37 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_38 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_39 | 1.0 | 0.0 | 1.0 |
| LEOBILOC_40 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_41 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_43 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_44 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_45 | 1.0 | 0.0 | 1.0 |
| LEOBILOC_46 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_47 | 1.0 | 0.0 | 1.0 |
| LEOBILOC_48 | 1.0 | 0.0 | 1.0 |
| LEOBILOC_49 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_50 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_51 | 1.0 | 0.0 | 1.0 |
| LEOBILOC_52 | 1.0 | 0.0 | 1.0 |
| LEOBILOC_54 | 1.0 | 0.0 | 1.0 |
| LEOBILOC_55 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_56 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_57 | 1.0 | 0.0 | 1.0 |
| LEOBILOC_58 | 1.0 | 0.0 | 1.0 |
| LEOBILOC_59 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_60 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_61 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_62 | 1.0 | 0.0 | 1.0 |
| LEOBILOC_63 | 1.0 | 0.0 | 1.0 |
| LEOBILOC_64 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_66 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_67 | 1.0 | 0.0 | 1.0 |
| LEOBILOC_68 | 1.0 | 0.0 | 1.0 |
| LEOBILOC_69 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_70 | 1.0 | 0.0 | 1.0 |
| LEOBILOC_71 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_73 | 1.0 | 0.0 | 1.0 |
| LEOBILOC_74 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_76 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_77 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_80 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_81 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_82 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_83 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_84 | 1.0 | 0.0 | 1.0 |
| LEOBILOC_85 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_86 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_87 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_88 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_90 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_91 | 1.0 | 0.0 | 1.0 |
| LEOBILOC_92 | 1.0 | 0.0 | 1.0 |
| LEOBILOC_93 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_94 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_95 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_96 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_97 | 1.0 | 0.0 | 1.0 |
| LEOBILOC_98 | 1.0 | 0.0 | 1.0 |
| LEOBILOC_100 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_102 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_103 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_104 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_105 | 0.0 | 1.0 | 0.0 |
| LEOBILOC_106 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LEOBILOC_31 | 4079 | 42779 | False | Myoviridae | VOG7013, VOG4845, VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG10904, VOG1956, VOG6163, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG4710, VOG1942, VOG2779, VOG1915, VOG4564, VOG1912, VOG7407, VOG0796, VOG5447, VOG8445, VOG4694, VOG4658, VOG6440, VOG5617, VOG1292, VOG1309, VOG0083, VOG2928, VOG1878, VOG3549, VOG0650, VOG10059, VOG11075, VOG9667, VOG4602, VOG7508 |
Phigaro v2.4.0 (Database: Jan. 2024 release)