Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PGNNLFNB_1 | 59124 | 59318 | CspA | 1.68e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PGNNLFNB_1 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_2 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_3 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_4 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_5 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_6 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_7 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_8 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_10 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_11 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_12 | 1.0 | 0.0 | 1.0 |
| PGNNLFNB_13 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_14 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_15 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_16 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_17 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_18 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_19 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_20 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_21 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_22 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_23 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_24 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_25 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_26 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_27 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_28 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_29 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_30 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_31 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_32 | 1.0 | 0.0 | 1.0 |
| PGNNLFNB_33 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_34 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_35 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_36 | 1.0 | 0.0 | 1.0 |
| PGNNLFNB_37 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_38 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_39 | 1.0 | 0.0 | 1.0 |
| PGNNLFNB_40 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_41 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_42 | 1.0 | 0.0 | 1.0 |
| PGNNLFNB_43 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_45 | 1.0 | 0.0 | 1.0 |
| PGNNLFNB_46 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_47 | 1.0 | 0.0 | 1.0 |
| PGNNLFNB_48 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_49 | 1.0 | 0.0 | 1.0 |
| PGNNLFNB_50 | 1.0 | 0.0 | 1.0 |
| PGNNLFNB_51 | 1.0 | 0.0 | 1.0 |
| PGNNLFNB_52 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_54 | 1.0 | 0.0 | 1.0 |
| PGNNLFNB_55 | 1.0 | 0.0 | 1.0 |
| PGNNLFNB_56 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_57 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_58 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_59 | 1.0 | 0.0 | 1.0 |
| PGNNLFNB_60 | 1.0 | 0.0 | 1.0 |
| PGNNLFNB_61 | 1.0 | 0.0 | 1.0 |
| PGNNLFNB_62 | 1.0 | 0.0 | 1.0 |
| PGNNLFNB_63 | 1.0 | 0.0 | 1.0 |
| PGNNLFNB_64 | 1.0 | 0.0 | 1.0 |
| PGNNLFNB_65 | 1.0 | 0.0 | 1.0 |
| PGNNLFNB_66 | 1.0 | 0.0 | 1.0 |
| PGNNLFNB_67 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_68 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_69 | 1.0 | 0.0 | 1.0 |
| PGNNLFNB_70 | 1.0 | 0.0 | 1.0 |
| PGNNLFNB_71 | 1.0 | 0.0 | 1.0 |
| PGNNLFNB_72 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_73 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_74 | 1.0 | 0.0 | 1.0 |
| PGNNLFNB_75 | 1.0 | 0.0 | 1.0 |
| PGNNLFNB_76 | 1.0 | 0.0 | 1.0 |
| PGNNLFNB_77 | 1.0 | 0.0 | 1.0 |
| PGNNLFNB_78 | 1.0 | 0.0 | 1.0 |
| PGNNLFNB_79 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_90 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_101 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_112 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_113 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_124 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_135 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_146 | 1.0 | 0.0 | 1.0 |
| PGNNLFNB_157 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_163 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_164 | 1.0 | 0.0 | 1.0 |
| PGNNLFNB_165 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_166 | 1.0 | 0.0 | 1.0 |
| PGNNLFNB_167 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_168 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_169 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_170 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_171 | 1.0 | 0.0 | 1.0 |
| PGNNLFNB_172 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_173 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_174 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_175 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_176 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_177 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_178 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_179 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_180 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_181 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_182 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_183 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_184 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_185 | 1.0 | 0.0 | 1.0 |
| PGNNLFNB_186 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_187 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_188 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_189 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_190 | 1.0 | 0.0 | 1.0 |
| PGNNLFNB_191 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_192 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_193 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_194 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_195 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_196 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_197 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_198 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_199 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_200 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_201 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_202 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_203 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_204 | 1.0 | 0.0 | 1.0 |
| PGNNLFNB_205 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_206 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_207 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_208 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_209 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_210 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_211 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_212 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_213 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_214 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_215 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_216 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_217 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_218 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_219 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_220 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_221 | 1.0 | 0.0 | 1.0 |
| PGNNLFNB_222 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_223 | 1.0 | 0.0 | 1.0 |
| PGNNLFNB_224 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_225 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_226 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_227 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_228 | 1.0 | 0.0 | 1.0 |
| PGNNLFNB_229 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_230 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_231 | 1.0 | 0.0 | 1.0 |
| PGNNLFNB_232 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_233 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_234 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_235 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_236 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_237 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_238 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_239 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_240 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_241 | 0.0 | 1.0 | 0.0 |
| PGNNLFNB_242 | 1.0 | 0.0 | 1.0 |
| PGNNLFNB_243 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PGNNLFNB_146 | 10314 | 19001 | False | Siphoviridae | VOG0704, VOG4713, VOG4711, VOG4555, VOG4564, VOG0720, VOG4544 |
| PGNNLFNB_190 | 6965 | 41869 | False | Siphoviridae | VOG8426, VOG4881, VOG2228, VOG5420, VOG9708, VOG0283, VOG0226, VOG8647, VOG0189, VOG0536, VOG3307, VOG9500, VOG0198, VOG7639, VOG8600, VOG0376, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG10819, VOG0801, VOG3462, VOG10972, VOG0565, VOG9997, VOG4626 |
Phigaro v2.4.0 (Database: Jan. 2024 release)