Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CNEDLNLC_29 | 534 | 2450 | tet(O) | ARO:3000190 | tet(O) | 98.28 | 100.00 | M18896.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CNEDLNLC_29 | 534 | 2452 | tet(O) | Doxycycline, Tetracycline, Minocycline | 100.00 | 99.95 | Y07780 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CNEDLNLC_29 | 534 | 2450 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | EXACTX | 100.00 | 100.00 | WP_000691759.1 |
| CNEDLNLC_185 | 15429 | 15629 | vanU-G | glycopeptide resistance transcriptional regulator VanU-G | PARTIALX | 80.60 | 89.33 | WP_021418929.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CNEDLNLC_1 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_2 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_3 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_4 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_5 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_6 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_7 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_8 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_9 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_10 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_11 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_12 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_13 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_15 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_16 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_17 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_18 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_19 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_20 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_21 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_22 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_23 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_24 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_25 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_26 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_27 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_28 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_29 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_30 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_31 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_32 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_33 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_34 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_35 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_36 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_37 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_38 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_39 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_40 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_41 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_42 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_43 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_44 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_45 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_46 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_48 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_49 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_50 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_51 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_53 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_54 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_55 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_56 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_57 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_58 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_59 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_60 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_61 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_62 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_63 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_64 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_65 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_66 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_68 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_69 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_70 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_71 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_72 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_73 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_75 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_76 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_77 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_78 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_79 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_87 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_97 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_106 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_107 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_118 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_127 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_136 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_145 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_154 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_155 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_156 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_157 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_158 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_159 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_160 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_161 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_162 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_163 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_164 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_165 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_166 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_167 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_168 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_169 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_170 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_171 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_172 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_173 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_174 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_175 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_176 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_177 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_178 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_179 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_180 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_181 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_182 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_183 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_184 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_185 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_186 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_187 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_188 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_189 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_190 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_191 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_192 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_193 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_194 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_195 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_196 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_197 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_198 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_199 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_200 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_201 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_202 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_203 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_204 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_205 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_206 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_207 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_208 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_209 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_210 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_211 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_212 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_213 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_214 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_215 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_216 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_217 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_218 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_219 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_220 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_221 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_222 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_223 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_224 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_225 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_226 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_227 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_228 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_229 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_230 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_231 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_232 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_233 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_234 | 0.0 | 1.0 | 0.0 |
| CNEDLNLC_235 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_236 | 1.0 | 0.0 | 1.0 |
| CNEDLNLC_237 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CNEDLNLC_215 | 74521 | 88047 | False | Siphoviridae | VOG0198, |
Phigaro v2.4.0 (Database: Jan. 2024 release)