Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NNJPFCCJ_123 | 72075 | 73295 | tet(40) | ARO:3000567 | tet(40) | 97.29 | 100.00 | AM419751.1 |
| NNJPFCCJ_123 | 70015 | 71934 | tet(O) | ARO:3000190 | tet(O) | 97.50 | 100.00 | M18896.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NNJPFCCJ_123 | 72075 | 73295 | tet(40) | Doxycycline, Tetracycline | 99.34 | 100.00 | FJ158002 |
| NNJPFCCJ_123 | 70015 | 71934 | tet(O) | Doxycycline, Tetracycline, Minocycline | 99.32 | 100.00 | Y07780 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NNJPFCCJ_123 | 70015 | 71931 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | BLASTX | 99.06 | 100.00 | WP_014636291.1 |
| NNJPFCCJ_123 | 72075 | 73292 | tet(40) | tetracycline efflux MFS transporter Tet(40) | BLASTX | 98.52 | 100.00 | WP_009247026.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NNJPFCCJ_2 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_3 | 1.0 | 0.0 | 1.0 |
| NNJPFCCJ_5 | 1.0 | 0.0 | 1.0 |
| NNJPFCCJ_6 | 1.0 | 0.0 | 1.0 |
| NNJPFCCJ_7 | 1.0 | 0.0 | 1.0 |
| NNJPFCCJ_8 | 1.0 | 0.0 | 1.0 |
| NNJPFCCJ_9 | 1.0 | 0.0 | 1.0 |
| NNJPFCCJ_10 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_11 | 1.0 | 0.0 | 1.0 |
| NNJPFCCJ_12 | 1.0 | 0.0 | 1.0 |
| NNJPFCCJ_13 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_14 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_15 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_17 | 1.0 | 0.0 | 1.0 |
| NNJPFCCJ_18 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_19 | 1.0 | 0.0 | 1.0 |
| NNJPFCCJ_21 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_23 | 1.0 | 0.0 | 1.0 |
| NNJPFCCJ_24 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_28 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_33 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_35 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_39 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_41 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_42 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_43 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_44 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_46 | 1.0 | 0.0 | 1.0 |
| NNJPFCCJ_48 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_50 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_51 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_54 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_55 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_56 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_57 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_60 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_61 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_63 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_64 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_66 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_68 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_71 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_72 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_73 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_75 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_77 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_80 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_81 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_82 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_83 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_84 | 1.0 | 0.0 | 1.0 |
| NNJPFCCJ_85 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_86 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_87 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_90 | 1.0 | 0.0 | 1.0 |
| NNJPFCCJ_91 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_92 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_93 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_94 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_95 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_97 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_98 | 1.0 | 0.0 | 1.0 |
| NNJPFCCJ_100 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_101 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_102 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_103 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_104 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_105 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_106 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_107 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_108 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_111 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_112 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_113 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_115 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_116 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_117 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_118 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_120 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_122 | 1.0 | 0.0 | 1.0 |
| NNJPFCCJ_123 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_124 | 1.0 | 0.0 | 1.0 |
| NNJPFCCJ_125 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_126 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_127 | 1.0 | 0.0 | 1.0 |
| NNJPFCCJ_128 | 1.0 | 0.0 | 1.0 |
| NNJPFCCJ_129 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_130 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_131 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_132 | 1.0 | 0.0 | 1.0 |
| NNJPFCCJ_133 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_134 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_135 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_136 | 1.0 | 0.0 | 1.0 |
| NNJPFCCJ_137 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_139 | 1.0 | 0.0 | 1.0 |
| NNJPFCCJ_140 | 1.0 | 0.0 | 1.0 |
| NNJPFCCJ_141 | 1.0 | 0.0 | 1.0 |
| NNJPFCCJ_142 | 1.0 | 0.0 | 1.0 |
| NNJPFCCJ_144 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_145 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_146 | 1.0 | 0.0 | 1.0 |
| NNJPFCCJ_147 | 1.0 | 0.0 | 1.0 |
| NNJPFCCJ_148 | 1.0 | 0.0 | 1.0 |
| NNJPFCCJ_149 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_151 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_152 | 1.0 | 0.0 | 1.0 |
| NNJPFCCJ_154 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_155 | 1.0 | 0.0 | 1.0 |
| NNJPFCCJ_156 | 0.0 | 1.0 | 0.0 |
| NNJPFCCJ_157 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)