Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JJBMFBIC_11 | 44470 | 45207 | ErmB | ARO:3000375 | ErmB | 98.78 | 98.79 | AF242872.1 |
| JJBMFBIC_130 | 68 | 1288 | tet(40) | ARO:3000567 | tet(40) | 98.52 | 100.00 | AM419751.1 |
| JJBMFBIC_144 | 39 | 1958 | tet(O) | ARO:3000190 | tet(O) | 93.43 | 100.00 | M18896.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JJBMFBIC_11 | 44470 | 45207 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | U18931 |
| JJBMFBIC_144 | 39 | 1958 | tet(O/32/O) | Doxycycline, Tetracycline, Minocycline | 99.64 | 100.00 | AIOQ01000025 |
| JJBMFBIC_130 | 68 | 1288 | tet(40) | Doxycycline, Tetracycline | 99.51 | 100.00 | AM419751 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JJBMFBIC_11 | 44473 | 45207 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | EXACTX | 100.00 | 100.00 | WP_002292226.1 |
| JJBMFBIC_130 | 68 | 1285 | tet(40) | tetracycline efflux MFS transporter Tet(40) | BLASTX | 98.77 | 100.00 | WP_009247026.1 |
| JJBMFBIC_144 | 42 | 1958 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | BLASTX | 93.90 | 100.00 | WP_063856405.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JJBMFBIC_1 | 1.0 | 0.0 | 1.0 |
| JJBMFBIC_2 | 1.0 | 0.0 | 1.0 |
| JJBMFBIC_4 | 1.0 | 0.0 | 1.0 |
| JJBMFBIC_5 | 1.0 | 0.0 | 1.0 |
| JJBMFBIC_6 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_7 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_8 | 1.0 | 0.0 | 1.0 |
| JJBMFBIC_9 | 1.0 | 0.0 | 1.0 |
| JJBMFBIC_10 | 1.0 | 0.0 | 1.0 |
| JJBMFBIC_11 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_22 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_32 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_42 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_49 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_59 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_60 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_61 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_62 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_63 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_64 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_65 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_66 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_67 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_68 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_69 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_70 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_71 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_72 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_73 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_74 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_75 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_76 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_77 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_78 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_79 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_80 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_81 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_82 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_83 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_84 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_85 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_86 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_87 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_88 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_89 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_90 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_91 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_92 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_93 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_94 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_95 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_96 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_97 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_98 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_99 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_100 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_101 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_102 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_103 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_104 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_105 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_106 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_107 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_108 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_109 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_110 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_111 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_112 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_113 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_114 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_115 | 1.0 | 0.0 | 1.0 |
| JJBMFBIC_116 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_117 | 1.0 | 0.0 | 1.0 |
| JJBMFBIC_118 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_119 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_120 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_121 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_122 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_123 | 1.0 | 0.0 | 1.0 |
| JJBMFBIC_124 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_125 | 1.0 | 0.0 | 1.0 |
| JJBMFBIC_126 | 1.0 | 0.0 | 1.0 |
| JJBMFBIC_127 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_128 | 1.0 | 0.0 | 1.0 |
| JJBMFBIC_129 | 1.0 | 0.0 | 1.0 |
| JJBMFBIC_130 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_133 | 1.0 | 0.0 | 1.0 |
| JJBMFBIC_136 | 1.0 | 0.0 | 1.0 |
| JJBMFBIC_137 | 1.0 | 0.0 | 1.0 |
| JJBMFBIC_138 | 1.0 | 0.0 | 1.0 |
| JJBMFBIC_139 | 1.0 | 0.0 | 1.0 |
| JJBMFBIC_141 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_142 | 1.0 | 0.0 | 1.0 |
| JJBMFBIC_143 | 1.0 | 0.0 | 1.0 |
| JJBMFBIC_144 | 1.0 | 0.0 | 1.0 |
| JJBMFBIC_146 | 1.0 | 0.0 | 1.0 |
| JJBMFBIC_147 | 0.0 | 1.0 | 0.0 |
| JJBMFBIC_148 | 1.0 | 0.0 | 1.0 |
| JJBMFBIC_149 | 1.0 | 0.0 | 1.0 |
| JJBMFBIC_150 | 1.0 | 0.0 | 1.0 |
| JJBMFBIC_152 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JJBMFBIC_11 | 44469 | 52170 | False | Siphoviridae | VOG7515, |
Phigaro v2.4.0 (Database: Jan. 2024 release)