Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| AEJOBEPO_6 | 60776 | 61480 | WalR | 2.11e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| AEJOBEPO_25 | 86113 | 85919 | CspR | 4.04e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| AEJOBEPO_25 | 86113 | 85916 | CspA | 6.20e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| AEJOBEPO_57 | 7240 | 8175 | rep28 | 936 / 936 | 100.00 | CP005948 |
| AEJOBEPO_46 | 37618 | 38520 | rep38 | 903 / 903 | 99.45 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AEJOBEPO_1 | 1.0 | 0.0 | 1.0 |
| AEJOBEPO_2 | 0.0 | 1.0 | 0.0 |
| AEJOBEPO_3 | 1.0 | 0.0 | 1.0 |
| AEJOBEPO_4 | 0.0 | 1.0 | 0.0 |
| AEJOBEPO_5 | 0.0 | 1.0 | 0.0 |
| AEJOBEPO_6 | 0.0 | 1.0 | 0.0 |
| AEJOBEPO_7 | 1.0 | 0.0 | 1.0 |
| AEJOBEPO_8 | 0.0 | 1.0 | 0.0 |
| AEJOBEPO_12 | 0.0 | 1.0 | 0.0 |
| AEJOBEPO_13 | 1.0 | 0.0 | 1.0 |
| AEJOBEPO_15 | 0.0 | 1.0 | 0.0 |
| AEJOBEPO_16 | 0.0 | 1.0 | 0.0 |
| AEJOBEPO_17 | 0.0 | 1.0 | 0.0 |
| AEJOBEPO_18 | 1.0 | 0.0 | 1.0 |
| AEJOBEPO_19 | 1.0 | 0.0 | 1.0 |
| AEJOBEPO_20 | 0.0 | 1.0 | 0.0 |
| AEJOBEPO_21 | 0.0 | 1.0 | 0.0 |
| AEJOBEPO_23 | 0.0 | 1.0 | 0.0 |
| AEJOBEPO_24 | 0.0 | 1.0 | 0.0 |
| AEJOBEPO_25 | 0.0 | 1.0 | 0.0 |
| AEJOBEPO_26 | 1.0 | 0.0 | 1.0 |
| AEJOBEPO_27 | 1.0 | 0.0 | 1.0 |
| AEJOBEPO_29 | 0.0 | 1.0 | 0.0 |
| AEJOBEPO_30 | 1.0 | 0.0 | 1.0 |
| AEJOBEPO_31 | 0.0 | 1.0 | 0.0 |
| AEJOBEPO_32 | 1.0 | 0.0 | 1.0 |
| AEJOBEPO_33 | 0.0 | 1.0 | 0.0 |
| AEJOBEPO_34 | 0.0 | 1.0 | 0.0 |
| AEJOBEPO_35 | 0.0 | 1.0 | 0.0 |
| AEJOBEPO_36 | 1.0 | 0.0 | 1.0 |
| AEJOBEPO_37 | 0.0 | 1.0 | 0.0 |
| AEJOBEPO_38 | 1.0 | 0.0 | 1.0 |
| AEJOBEPO_39 | 1.0 | 0.0 | 1.0 |
| AEJOBEPO_40 | 1.0 | 0.0 | 1.0 |
| AEJOBEPO_41 | 1.0 | 0.0 | 1.0 |
| AEJOBEPO_42 | 1.0 | 0.0 | 1.0 |
| AEJOBEPO_44 | 1.0 | 0.0 | 1.0 |
| AEJOBEPO_46 | 1.0 | 0.0 | 1.0 |
| AEJOBEPO_47 | 1.0 | 0.0 | 1.0 |
| AEJOBEPO_48 | 0.0 | 1.0 | 0.0 |
| AEJOBEPO_51 | 0.0 | 1.0 | 0.0 |
| AEJOBEPO_52 | 0.0 | 1.0 | 0.0 |
| AEJOBEPO_53 | 1.0 | 0.0 | 1.0 |
| AEJOBEPO_55 | 0.0 | 1.0 | 0.0 |
| AEJOBEPO_56 | 1.0 | 0.0 | 1.0 |
| AEJOBEPO_57 | 1.0 | 0.0 | 1.0 |
| AEJOBEPO_58 | 0.0 | 1.0 | 0.0 |
| AEJOBEPO_59 | 0.0 | 1.0 | 0.0 |
| AEJOBEPO_60 | 0.0 | 1.0 | 0.0 |
| AEJOBEPO_61 | 1.0 | 0.0 | 1.0 |
| AEJOBEPO_62 | 0.0 | 1.0 | 0.0 |
| AEJOBEPO_63 | 1.0 | 0.0 | 1.0 |
| AEJOBEPO_64 | 1.0 | 0.0 | 1.0 |
| AEJOBEPO_65 | 0.0 | 1.0 | 0.0 |
| AEJOBEPO_66 | 0.0 | 1.0 | 0.0 |
| AEJOBEPO_67 | 1.0 | 0.0 | 1.0 |
| AEJOBEPO_69 | 0.0 | 1.0 | 0.0 |
| AEJOBEPO_70 | 1.0 | 0.0 | 1.0 |
| AEJOBEPO_71 | 1.0 | 0.0 | 1.0 |
| AEJOBEPO_72 | 0.0 | 1.0 | 0.0 |
| AEJOBEPO_73 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AEJOBEPO_52 | 65383 | 93810 | False | Siphoviridae | VOG6545, VOG0514, VOG8647, VOG0189, VOG0044, VOG3643, VOG1049, VOG0198, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG4605, VOG4599, VOG10957, VOG8870 |
| AEJOBEPO_59 | 39794 | 42061 | False | Unknown | VOG6495, VOG6495, VOG3547 |
| AEJOBEPO_59 | 51714 | 76930 | False | Siphoviridae | VOG0198, VOG4571, VOG4571, VOG5616, VOG3699, VOG0691, VOG0692, VOG9317, VOG4711, VOG0695, VOG0696, VOG0697, VOG6548, VOG9763, VOG0701, VOG6163, VOG0801, VOG4619, VOG9741, VOG4705 |
Phigaro v2.4.0 (Database: Jan. 2024 release)