Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
LECGDNNK_485114020114724WalR3.62e-112transcriptional regulatory protein83.40100.00EPH95667
LECGDNNK_2582921629413CspR2.89e-33cold shock protein87.88100.00AAO82613

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
No hit found

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
LECGDNNK_190.01.00.0
LECGDNNK_320.01.00.0
LECGDNNK_500.01.00.0
LECGDNNK_1130.01.00.0
LECGDNNK_1210.01.00.0
LECGDNNK_1300.01.00.0
LECGDNNK_1500.01.00.0
LECGDNNK_1790.01.00.0
LECGDNNK_1940.01.00.0
LECGDNNK_2010.01.00.0
LECGDNNK_2060.01.00.0
LECGDNNK_2080.01.00.0
LECGDNNK_2170.01.00.0
LECGDNNK_2280.01.00.0
LECGDNNK_2350.01.00.0
LECGDNNK_2360.01.00.0
LECGDNNK_2490.01.00.0
LECGDNNK_2550.01.00.0
LECGDNNK_2580.01.00.0
LECGDNNK_2620.01.00.0
LECGDNNK_2690.01.00.0
LECGDNNK_2730.01.00.0
LECGDNNK_2840.01.00.0
LECGDNNK_2930.01.00.0
LECGDNNK_3000.01.00.0
LECGDNNK_3260.01.00.0
LECGDNNK_3341.00.01.0
LECGDNNK_3420.01.00.0
LECGDNNK_3590.01.00.0
LECGDNNK_3630.01.00.0
LECGDNNK_3730.01.00.0
LECGDNNK_3790.01.00.0
LECGDNNK_4030.01.00.0
LECGDNNK_4071.00.01.0
LECGDNNK_4150.01.00.0
LECGDNNK_4460.01.00.0
LECGDNNK_4581.00.01.0
LECGDNNK_4590.01.00.0
LECGDNNK_4710.01.00.0
LECGDNNK_4731.00.01.0
LECGDNNK_4760.01.00.0
LECGDNNK_4780.01.00.0
LECGDNNK_4820.01.00.0
LECGDNNK_4840.01.00.0
LECGDNNK_4850.01.00.0
LECGDNNK_4890.01.00.0
LECGDNNK_4960.01.00.0
LECGDNNK_4970.01.00.0
LECGDNNK_5040.01.00.0
LECGDNNK_5070.01.00.0
LECGDNNK_5120.01.00.0
LECGDNNK_5240.01.00.0
LECGDNNK_5400.01.00.0
LECGDNNK_5470.01.00.0
LECGDNNK_5540.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
LECGDNNK_2584997053533FalseUnknownVOG1309, VOG0186, VOG4566
LECGDNNK_54019620669FalseSiphoviridaeVOG4605, VOG6163, VOG0083, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG5601, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841, VOG4549, VOG10904, VOG4570

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements