Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CMLJGKMO_3 | 8517 | 9944 | fexA | ARO:3002704 | fexA | 97.47 | 100.00 | AJ549214.1 |
| CMLJGKMO_4 | 3291 | 5219 | tet(M) | ARO:3000186 | tet(M) | 98.13 | 100.47 | AB039845.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CMLJGKMO_3 | 8517 | 9944 | fexA | Chloramphenicol, Florfenicol | 99.16 | 100.00 | AJ549214 |
| CMLJGKMO_4 | 3291 | 5219 | tet(M) | Doxycycline, Tetracycline, Minocycline | 98.55 | 100.00 | AM990992 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CMLJGKMO_4 | 3294 | 5219 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 98.13 | 100.00 | WP_000691727.1 |
| CMLJGKMO_3 | 8517 | 9941 | fexA | chloramphenicol/florfenicol efflux MFS transporter FexA | BLASTX | 97.47 | 100.00 | WP_015585966.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CMLJGKMO_2 | 38360 | 39390 | repUS67 | 1031 / 1039 | 95.54 | CP006012 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CMLJGKMO_1 | 0.0 | 1.0 | 0.0 |
| CMLJGKMO_2 | 1.0 | 0.0 | 1.0 |
| CMLJGKMO_3 | 1.0 | 0.0 | 1.0 |
| CMLJGKMO_4 | 1.0 | 0.0 | 1.0 |
| CMLJGKMO_5 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CMLJGKMO_1 | 687418 | 728813 | False | Siphoviridae | VOG5353, VOG4156, VOG3325, VOG5378, VOG0275, VOG4662, VOG8483, VOG0862, VOG9667, VOG7581, VOG4552, VOG2228, VOG9708, VOG0283, VOG0226, VOG5046, VOG0189, VOG5133, VOG0536, VOG6214, VOG0686, VOG0638, VOG1183, VOG0198, VOG4841, VOG4581, VOG1886, VOG4556, VOG4568, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG6163, VOG0801, VOG3462, VOG3463, VOG6917, VOG4856, VOG4334, VOG7896, VOG4868, VOG8917, VOG0703, VOG8294 |
| CMLJGKMO_2 | 41865 | 48853 | True | Unknown | VOG5088, VOG5088, VOG0275, VOG0275, VOG8643, VOG5088, VOG8916, VOG5332 |
Phigaro v2.4.0 (Database: Jan. 2024 release)