Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 2 | 5.39 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PDFJJMPM_142 | 47971 | 48465 | lnuC | ARO:3002837 | lnuC | 98.17 | 100.00 | AY928180.1 |
| PDFJJMPM_149 | 6391 | 8310 | tet(M) | ARO:3000186 | tet(M) | 93.27 | 100.00 | AB039845.1 |
| PDFJJMPM_149 | 4821 | 6197 | tet(L) | ARO:3000179 | tet(L) | 98.69 | 100.00 | M11036.1 |
| PDFJJMPM_149 | 3131 | 3778 | catA8 | ARO:3004658 | catA8 | 97.21 | 100.00 | JQ922409.1 |
| PDFJJMPM_30 | 3075 | 3938 | ANT(6)-Ia | ARO:3002626 | ANT(6)-Ia | 100.00 | 100.00 | KF648874.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PDFJJMPM_30 | 3075 | 3938 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | KF421157 |
| PDFJJMPM_149 | 4821 | 6196 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 99.71 | 99.93 | AY081910 |
| PDFJJMPM_149 | 3131 | 3778 | cat | Chloramphenicol | 99.07 | 100.00 | U35036 |
| PDFJJMPM_142 | 47971 | 48465 | lnu(C) | Lincomycin | 98.99 | 100.00 | AY928180 |
| PDFJJMPM_149 | 6391 | 8310 | tet(M) | Doxycycline, Tetracycline, Minocycline | 96.93 | 100.00 | FR671418 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PDFJJMPM_30 | 3078 | 3938 | ant(6)-Ia | aminoglycoside nucleotidyltransferase ANT(6)-Ia | EXACTX | 100.00 | 100.00 | WP_002294505.1 |
| PDFJJMPM_149 | 4824 | 6197 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 99.13 | 100.00 | WP_002294500.1 |
| PDFJJMPM_142 | 47971 | 48462 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 98.17 | 100.00 | WP_063851341.1 |
| PDFJJMPM_149 | 6394 | 8310 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 98.12 | 100.00 | WP_063856394.1 |
| PDFJJMPM_149 | 3134 | 3778 | catA | type A-8 chloramphenicol O-acetyltransferase | BLASTX | 97.67 | 100.00 | WP_002352254.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PDFJJMPM_193 | 12202 | 12909 | WalR | 1.19e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| PDFJJMPM_5 | 418 | 221 | CspR | 1.19e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| PDFJJMPM_5 | 418 | 224 | CspA | 5.81e-29 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PDFJJMPM_1 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_2 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_3 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_4 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_5 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_6 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_7 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_8 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_9 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_10 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_11 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_12 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_13 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_14 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_15 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_16 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_17 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_18 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_19 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_20 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_21 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_22 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_23 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_24 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_25 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_26 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_27 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_28 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_29 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_30 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_31 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_32 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_33 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_34 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_35 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_36 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_37 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_38 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_40 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_41 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_42 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_43 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_44 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_45 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_46 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_47 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_48 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_49 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_50 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_51 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_52 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_53 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_54 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_55 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_56 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_57 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_58 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_59 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_60 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_61 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_62 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_63 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_64 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_65 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_66 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_67 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_68 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_69 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_70 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_71 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_72 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_73 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_74 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_75 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_76 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_77 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_78 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_79 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_80 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_81 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_82 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_83 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_84 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_85 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_86 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_87 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_88 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_89 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_90 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_91 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_92 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_94 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_95 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_96 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_97 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_98 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_99 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_100 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_101 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_102 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_103 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_104 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_105 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_106 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_107 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_108 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_109 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_110 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_111 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_112 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_113 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_114 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_115 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_116 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_117 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_118 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_119 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_120 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_121 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_122 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_123 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_124 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_125 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_126 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_127 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_128 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_129 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_130 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_131 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_132 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_133 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_134 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_135 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_136 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_137 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_138 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_139 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_140 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_141 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_142 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_144 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_145 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_146 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_147 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_148 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_149 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_150 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_151 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_152 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_153 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_154 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_155 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_156 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_157 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_158 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_159 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_160 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_161 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_163 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_164 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_165 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_166 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_167 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_168 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_169 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_170 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_171 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_172 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_173 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_174 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_175 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_176 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_177 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_178 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_179 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_180 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_181 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_182 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_183 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_184 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_185 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_186 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_187 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_188 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_189 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_190 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_191 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_192 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_193 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_194 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_195 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_196 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_197 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_198 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_199 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_200 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_201 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_202 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_203 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_204 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_205 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_206 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_207 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_208 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_209 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_210 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_211 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_212 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_213 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_214 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_215 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_216 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_217 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_218 | 0.0 | 1.0 | 0.0 |
| PDFJJMPM_219 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_220 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_221 | 1.0 | 0.0 | 1.0 |
| PDFJJMPM_222 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PDFJJMPM_182 | 3128 | 35897 | False | Siphoviridae | VOG4334, VOG5465, VOG5601, VOG4856, VOG0643, VOG3462, VOG0801, VOG4545, VOG4586, VOG0207, VOG9583, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG8681, VOG7887, VOG0198, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321, VOG6357, VOG9747, VOG0650 |
| PDFJJMPM_209 | 11315 | 30831 | False | Siphoviridae | VOG0468, VOG5629, VOG5545, VOG10560, VOG2246, VOG0198, VOG8681, VOG0638, VOG4841, VOG4844, VOG4556, VOG4573, VOG5852, VOG6163, VOG4633, VOG4828, VOG8438 |
Phigaro v2.4.0 (Database: Jan. 2024 release)