Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 2 | 5.39 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CJGODNGC_189 | 24607 | 25101 | lnuC | ARO:3002837 | lnuC | 98.17 | 100.00 | AY928180.1 |
| CJGODNGC_50 | 4697 | 5560 | ANT(6)-Ia | ARO:3002626 | ANT(6)-Ia | 100.00 | 100.00 | KF648874.1 |
| CJGODNGC_186 | 4583 | 5230 | catA8 | ARO:3004658 | catA8 | 97.21 | 100.00 | JQ922409.1 |
| CJGODNGC_186 | 2164 | 3540 | tet(L) | ARO:3000179 | tet(L) | 98.69 | 100.00 | M11036.1 |
| CJGODNGC_186 | 51 | 1970 | tet(M) | ARO:3000186 | tet(M) | 93.27 | 100.00 | AB039845.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CJGODNGC_50 | 4697 | 5560 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | KF421157 |
| CJGODNGC_186 | 2165 | 3540 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.71 | 99.93 | AY081910 |
| CJGODNGC_186 | 4583 | 5230 | cat | Chloramphenicol | 99.07 | 100.00 | U35036 |
| CJGODNGC_189 | 24607 | 25101 | lnu(C) | Lincomycin | 98.99 | 100.00 | AY928180 |
| CJGODNGC_186 | 51 | 1970 | tet(M) | Doxycycline, Tetracycline, Minocycline | 96.93 | 100.00 | FR671418 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CJGODNGC_50 | 4697 | 5557 | ant(6)-Ia | aminoglycoside nucleotidyltransferase ANT(6)-Ia | EXACTX | 100.00 | 100.00 | WP_002294505.1 |
| CJGODNGC_186 | 2164 | 3537 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 99.13 | 100.00 | WP_002294500.1 |
| CJGODNGC_189 | 24610 | 25101 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 98.17 | 100.00 | WP_063851341.1 |
| CJGODNGC_186 | 51 | 1967 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 98.12 | 100.00 | WP_063856394.1 |
| CJGODNGC_186 | 4583 | 5227 | catA | type A-8 chloramphenicol O-acetyltransferase | BLASTX | 97.67 | 100.00 | WP_002352254.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CJGODNGC_20 | 20187 | 19480 | WalR | 9.62e-117 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| CJGODNGC_157 | 238 | 41 | CspR | 1.16e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| CJGODNGC_157 | 238 | 44 | CspA | 5.68e-29 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CJGODNGC_1 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_2 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_3 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_4 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_5 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_6 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_7 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_8 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_9 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_10 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_11 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_12 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_13 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_14 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_15 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_16 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_17 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_18 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_19 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_20 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_21 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_22 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_23 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_24 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_25 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_26 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_27 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_28 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_29 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_30 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_31 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_32 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_33 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_34 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_35 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_36 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_37 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_38 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_39 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_40 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_41 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_42 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_43 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_44 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_45 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_46 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_47 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_48 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_49 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_50 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_51 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_52 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_53 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_54 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_55 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_56 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_57 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_58 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_59 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_60 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_61 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_62 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_63 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_64 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_65 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_66 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_67 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_68 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_69 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_70 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_71 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_72 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_73 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_75 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_76 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_77 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_78 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_79 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_80 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_81 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_82 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_83 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_84 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_85 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_86 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_87 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_88 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_89 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_90 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_91 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_92 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_93 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_94 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_95 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_96 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_97 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_98 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_99 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_101 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_102 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_103 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_104 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_105 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_106 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_107 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_108 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_109 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_110 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_111 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_112 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_113 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_114 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_115 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_116 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_117 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_118 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_120 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_121 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_122 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_123 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_124 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_125 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_126 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_127 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_128 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_129 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_130 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_131 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_132 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_133 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_134 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_135 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_137 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_138 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_139 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_140 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_141 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_142 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_143 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_144 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_145 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_146 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_147 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_148 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_149 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_150 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_151 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_152 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_153 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_154 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_155 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_156 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_157 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_158 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_159 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_160 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_161 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_162 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_163 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_164 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_165 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_166 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_167 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_168 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_169 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_170 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_171 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_172 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_173 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_174 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_175 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_176 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_177 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_178 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_179 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_180 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_181 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_182 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_183 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_184 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_185 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_186 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_187 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_188 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_189 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_190 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_191 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_192 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_193 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_194 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_195 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_196 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_197 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_198 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_199 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_200 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_201 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_202 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_203 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_204 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_205 | 0.0 | 1.0 | 0.0 |
| CJGODNGC_206 | 1.0 | 0.0 | 1.0 |
| CJGODNGC_207 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CJGODNGC_124 | 4263 | 20723 | False | Siphoviridae | VOG4828, VOG4633, VOG6163, VOG5852, VOG4573, VOG4556, VOG4844, VOG4841, VOG0638, VOG8681, VOG0198, VOG2246, VOG10560, VOG5545, VOG5629 |
| CJGODNGC_206 | 2796 | 29896 | False | Siphoviridae | VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG0198, VOG7887, VOG8681, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586, VOG4545, VOG0801, VOG3462 |
Phigaro v2.4.0 (Database: Jan. 2024 release)