Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NGEJFEAC_66 | 138587 | 137883 | WalR | 2.07e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| NGEJFEAC_33 | 23057 | 22860 | CspR | 1.32e-32 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| NGEJFEAC_35 | 6373 | 7431 | repUS75 | 1059 / 1059 | 96.60 | CP002393 |
| NGEJFEAC_23 | 20648 | 21212 | rep38 | 573 / 903 | 90.05 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NGEJFEAC_1 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_2 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_3 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_4 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_5 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_6 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_7 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_8 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_9 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_10 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_11 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_12 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_13 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_14 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_15 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_16 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_17 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_18 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_19 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_20 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_21 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_22 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_23 | 1.0 | 0.0 | 1.0 |
| NGEJFEAC_24 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_25 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_26 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_27 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_28 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_29 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_30 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_31 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_32 | 1.0 | 0.0 | 1.0 |
| NGEJFEAC_33 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_34 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_35 | 1.0 | 0.0 | 1.0 |
| NGEJFEAC_36 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_37 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_38 | 1.0 | 0.0 | 1.0 |
| NGEJFEAC_39 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_40 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_41 | 1.0 | 0.0 | 1.0 |
| NGEJFEAC_42 | 1.0 | 0.0 | 1.0 |
| NGEJFEAC_43 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_44 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_45 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_46 | 1.0 | 0.0 | 1.0 |
| NGEJFEAC_47 | 1.0 | 0.0 | 1.0 |
| NGEJFEAC_49 | 1.0 | 0.0 | 1.0 |
| NGEJFEAC_50 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_51 | 1.0 | 0.0 | 1.0 |
| NGEJFEAC_52 | 1.0 | 0.0 | 1.0 |
| NGEJFEAC_53 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_54 | 1.0 | 0.0 | 1.0 |
| NGEJFEAC_55 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_56 | 1.0 | 0.0 | 1.0 |
| NGEJFEAC_57 | 1.0 | 0.0 | 1.0 |
| NGEJFEAC_58 | 1.0 | 0.0 | 1.0 |
| NGEJFEAC_59 | 1.0 | 0.0 | 1.0 |
| NGEJFEAC_60 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_61 | 1.0 | 0.0 | 1.0 |
| NGEJFEAC_62 | 1.0 | 0.0 | 1.0 |
| NGEJFEAC_63 | 1.0 | 0.0 | 1.0 |
| NGEJFEAC_64 | 1.0 | 0.0 | 1.0 |
| NGEJFEAC_65 | 1.0 | 0.0 | 1.0 |
| NGEJFEAC_66 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_67 | 1.0 | 0.0 | 1.0 |
| NGEJFEAC_68 | 1.0 | 0.0 | 1.0 |
| NGEJFEAC_69 | 1.0 | 0.0 | 1.0 |
| NGEJFEAC_77 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_82 | 0.0 | 1.0 | 0.0 |
| NGEJFEAC_83 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NGEJFEAC_10 | 27108 | 49497 | False | Siphoviridae | VOG3412, VOG4918, VOG0054, VOG7888, VOG4705, VOG4599, VOG4605, VOG0083, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG5601, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841 |
| NGEJFEAC_33 | 95416 | 106673 | False | Siphoviridae | VOG4589, VOG0204, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4609, VOG4632, VOG4632 |
Phigaro v2.4.0 (Database: Jan. 2024 release)