Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NDPDGGDB_74 | 138442 | 137738 | WalR | 2.07e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| NDPDGGDB_11 | 295392 | 295589 | CspR | 1.75e-32 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| NDPDGGDB_25 | 6286 | 7344 | repUS75 | 1059 / 1059 | 96.60 | CP002393 |
| NDPDGGDB_45 | 236 | 734 | repUS54 | 500 / 690 | 85.00 | EU185047 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NDPDGGDB_1 | 0.0 | 1.0 | 0.0 |
| NDPDGGDB_2 | 0.0 | 1.0 | 0.0 |
| NDPDGGDB_3 | 0.0 | 1.0 | 0.0 |
| NDPDGGDB_4 | 0.0 | 1.0 | 0.0 |
| NDPDGGDB_5 | 0.0 | 1.0 | 0.0 |
| NDPDGGDB_6 | 0.0 | 1.0 | 0.0 |
| NDPDGGDB_7 | 0.0 | 1.0 | 0.0 |
| NDPDGGDB_8 | 0.0 | 1.0 | 0.0 |
| NDPDGGDB_9 | 0.0 | 1.0 | 0.0 |
| NDPDGGDB_10 | 0.0 | 1.0 | 0.0 |
| NDPDGGDB_11 | 0.0 | 1.0 | 0.0 |
| NDPDGGDB_12 | 0.0 | 1.0 | 0.0 |
| NDPDGGDB_13 | 0.0 | 1.0 | 0.0 |
| NDPDGGDB_14 | 0.0 | 1.0 | 0.0 |
| NDPDGGDB_15 | 0.0 | 1.0 | 0.0 |
| NDPDGGDB_16 | 0.0 | 1.0 | 0.0 |
| NDPDGGDB_17 | 0.0 | 1.0 | 0.0 |
| NDPDGGDB_18 | 0.0 | 1.0 | 0.0 |
| NDPDGGDB_19 | 0.0 | 1.0 | 0.0 |
| NDPDGGDB_20 | 0.0 | 1.0 | 0.0 |
| NDPDGGDB_21 | 0.0 | 1.0 | 0.0 |
| NDPDGGDB_22 | 0.0 | 1.0 | 0.0 |
| NDPDGGDB_23 | 0.0 | 1.0 | 0.0 |
| NDPDGGDB_24 | 1.0 | 0.0 | 1.0 |
| NDPDGGDB_25 | 1.0 | 0.0 | 1.0 |
| NDPDGGDB_26 | 0.0 | 1.0 | 0.0 |
| NDPDGGDB_27 | 1.0 | 0.0 | 1.0 |
| NDPDGGDB_28 | 0.0 | 1.0 | 0.0 |
| NDPDGGDB_29 | 1.0 | 0.0 | 1.0 |
| NDPDGGDB_30 | 1.0 | 0.0 | 1.0 |
| NDPDGGDB_31 | 1.0 | 0.0 | 1.0 |
| NDPDGGDB_32 | 0.0 | 1.0 | 0.0 |
| NDPDGGDB_33 | 0.0 | 1.0 | 0.0 |
| NDPDGGDB_34 | 0.0 | 1.0 | 0.0 |
| NDPDGGDB_35 | 1.0 | 0.0 | 1.0 |
| NDPDGGDB_37 | 1.0 | 0.0 | 1.0 |
| NDPDGGDB_38 | 0.0 | 1.0 | 0.0 |
| NDPDGGDB_39 | 1.0 | 0.0 | 1.0 |
| NDPDGGDB_40 | 0.0 | 1.0 | 0.0 |
| NDPDGGDB_41 | 1.0 | 0.0 | 1.0 |
| NDPDGGDB_42 | 1.0 | 0.0 | 1.0 |
| NDPDGGDB_43 | 1.0 | 0.0 | 1.0 |
| NDPDGGDB_44 | 0.0 | 1.0 | 0.0 |
| NDPDGGDB_45 | 1.0 | 0.0 | 1.0 |
| NDPDGGDB_47 | 1.0 | 0.0 | 1.0 |
| NDPDGGDB_48 | 0.0 | 1.0 | 0.0 |
| NDPDGGDB_49 | 1.0 | 0.0 | 1.0 |
| NDPDGGDB_50 | 1.0 | 0.0 | 1.0 |
| NDPDGGDB_51 | 1.0 | 0.0 | 1.0 |
| NDPDGGDB_52 | 1.0 | 0.0 | 1.0 |
| NDPDGGDB_53 | 1.0 | 0.0 | 1.0 |
| NDPDGGDB_55 | 0.0 | 1.0 | 0.0 |
| NDPDGGDB_56 | 1.0 | 0.0 | 1.0 |
| NDPDGGDB_57 | 1.0 | 0.0 | 1.0 |
| NDPDGGDB_58 | 1.0 | 0.0 | 1.0 |
| NDPDGGDB_59 | 1.0 | 0.0 | 1.0 |
| NDPDGGDB_66 | 0.0 | 1.0 | 0.0 |
| NDPDGGDB_74 | 0.0 | 1.0 | 0.0 |
| NDPDGGDB_79 | 0.0 | 1.0 | 0.0 |
| NDPDGGDB_80 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NDPDGGDB_11 | 4810 | 42411 | False | Siphoviridae | VOG6495, VOG4552, VOG4552, VOG3711, VOG3459, VOG0181, VOG10867, VOG4967, VOG3642, VOG0321, VOG0322, VOG0226, VOG4799, VOG0025, VOG7735, VOG4693, VOG4813, VOG9759, VOG2820, VOG3643, VOG3643, VOG0044, VOG0198, VOG4549, VOG4841, VOG4581, VOG4544, VOG3644, VOG4556, VOG4568, VOG4553, VOG5601, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG4605, VOG4599, VOG4705, VOG7888, VOG0054, VOG4918 |
| NDPDGGDB_11 | 212162 | 223031 | False | Siphoviridae | VOG4632, VOG4632, VOG4609, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204, VOG4589 |
Phigaro v2.4.0 (Database: Jan. 2024 release)