Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IDIFMHGJ_45 | 138443 | 137739 | WalR | 2.06e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| IDIFMHGJ_23 | 23057 | 22860 | CspR | 1.32e-32 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| IDIFMHGJ_31 | 5939 | 6997 | repUS75 | 1059 / 1059 | 96.60 | CP002393 |
| IDIFMHGJ_58 | 90 | 588 | repUS54 | 500 / 690 | 85.00 | EU185047 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IDIFMHGJ_2 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_3 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_4 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_5 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_6 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_7 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_8 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_9 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_10 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_11 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_12 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_13 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_14 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_15 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_16 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_17 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_18 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_19 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_20 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_21 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_22 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_23 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_24 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_25 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_26 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_27 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_28 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_29 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_30 | 1.0 | 0.0 | 1.0 |
| IDIFMHGJ_31 | 1.0 | 0.0 | 1.0 |
| IDIFMHGJ_32 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_33 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_34 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_35 | 1.0 | 0.0 | 1.0 |
| IDIFMHGJ_36 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_37 | 1.0 | 0.0 | 1.0 |
| IDIFMHGJ_38 | 1.0 | 0.0 | 1.0 |
| IDIFMHGJ_39 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_40 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_41 | 1.0 | 0.0 | 1.0 |
| IDIFMHGJ_42 | 1.0 | 0.0 | 1.0 |
| IDIFMHGJ_44 | 1.0 | 0.0 | 1.0 |
| IDIFMHGJ_45 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_47 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_48 | 1.0 | 0.0 | 1.0 |
| IDIFMHGJ_50 | 1.0 | 0.0 | 1.0 |
| IDIFMHGJ_51 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_52 | 1.0 | 0.0 | 1.0 |
| IDIFMHGJ_55 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_56 | 1.0 | 0.0 | 1.0 |
| IDIFMHGJ_57 | 1.0 | 0.0 | 1.0 |
| IDIFMHGJ_58 | 1.0 | 0.0 | 1.0 |
| IDIFMHGJ_59 | 1.0 | 0.0 | 1.0 |
| IDIFMHGJ_60 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_61 | 1.0 | 0.0 | 1.0 |
| IDIFMHGJ_62 | 1.0 | 0.0 | 1.0 |
| IDIFMHGJ_63 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_64 | 1.0 | 0.0 | 1.0 |
| IDIFMHGJ_65 | 1.0 | 0.0 | 1.0 |
| IDIFMHGJ_66 | 1.0 | 0.0 | 1.0 |
| IDIFMHGJ_67 | 1.0 | 0.0 | 1.0 |
| IDIFMHGJ_69 | 1.0 | 0.0 | 1.0 |
| IDIFMHGJ_70 | 1.0 | 0.0 | 1.0 |
| IDIFMHGJ_71 | 1.0 | 0.0 | 1.0 |
| IDIFMHGJ_72 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_73 | 1.0 | 0.0 | 1.0 |
| IDIFMHGJ_79 | 0.0 | 1.0 | 0.0 |
| IDIFMHGJ_86 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IDIFMHGJ_3 | 4889 | 42488 | False | Siphoviridae | VOG6495, VOG4552, VOG4552, VOG3711, VOG3459, VOG0181, VOG10867, VOG4967, VOG3642, VOG0321, VOG0322, VOG0226, VOG4799, VOG0025, VOG7735, VOG4693, VOG4813, VOG9759, VOG2820, VOG3643, VOG3643, VOG0044, VOG0198, VOG4549, VOG4841, VOG4581, VOG4544, VOG3644, VOG4556, VOG4568, VOG4553, VOG5601, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG0083, VOG4605, VOG4599, VOG4705, VOG7888, VOG0054, VOG4918 |
| IDIFMHGJ_23 | 95417 | 105929 | False | Siphoviridae | VOG4589, VOG0204, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4609, VOG4632, VOG4632 |
Phigaro v2.4.0 (Database: Jan. 2024 release)