Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CNIOKLJP_66 | 138444 | 137740 | WalR | 2.06e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| CNIOKLJP_22 | 23056 | 22859 | CspR | 1.32e-32 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CNIOKLJP_30 | 6373 | 7431 | repUS75 | 1059 / 1059 | 96.60 | CP002393 |
| CNIOKLJP_53 | 362 | 860 | repUS54 | 500 / 690 | 85.00 | EU185047 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CNIOKLJP_1 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_2 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_3 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_4 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_5 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_6 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_7 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_8 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_9 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_10 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_11 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_12 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_13 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_14 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_15 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_16 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_17 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_18 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_19 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_20 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_21 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_22 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_23 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_24 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_25 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_26 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_27 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_28 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_29 | 1.0 | 0.0 | 1.0 |
| CNIOKLJP_30 | 1.0 | 0.0 | 1.0 |
| CNIOKLJP_31 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_32 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_33 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_34 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_35 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_36 | 1.0 | 0.0 | 1.0 |
| CNIOKLJP_37 | 1.0 | 0.0 | 1.0 |
| CNIOKLJP_38 | 1.0 | 0.0 | 1.0 |
| CNIOKLJP_39 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_40 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_41 | 1.0 | 0.0 | 1.0 |
| CNIOKLJP_42 | 1.0 | 0.0 | 1.0 |
| CNIOKLJP_44 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_45 | 1.0 | 0.0 | 1.0 |
| CNIOKLJP_46 | 1.0 | 0.0 | 1.0 |
| CNIOKLJP_47 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_48 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_49 | 1.0 | 0.0 | 1.0 |
| CNIOKLJP_50 | 1.0 | 0.0 | 1.0 |
| CNIOKLJP_51 | 1.0 | 0.0 | 1.0 |
| CNIOKLJP_52 | 1.0 | 0.0 | 1.0 |
| CNIOKLJP_53 | 1.0 | 0.0 | 1.0 |
| CNIOKLJP_54 | 1.0 | 0.0 | 1.0 |
| CNIOKLJP_55 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_56 | 1.0 | 0.0 | 1.0 |
| CNIOKLJP_57 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_58 | 1.0 | 0.0 | 1.0 |
| CNIOKLJP_59 | 1.0 | 0.0 | 1.0 |
| CNIOKLJP_60 | 1.0 | 0.0 | 1.0 |
| CNIOKLJP_61 | 1.0 | 0.0 | 1.0 |
| CNIOKLJP_62 | 1.0 | 0.0 | 1.0 |
| CNIOKLJP_63 | 1.0 | 0.0 | 1.0 |
| CNIOKLJP_64 | 1.0 | 0.0 | 1.0 |
| CNIOKLJP_65 | 1.0 | 0.0 | 1.0 |
| CNIOKLJP_66 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_67 | 1.0 | 0.0 | 1.0 |
| CNIOKLJP_77 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_78 | 0.0 | 1.0 | 0.0 |
| CNIOKLJP_79 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CNIOKLJP_9 | 36881 | 59270 | False | Siphoviridae | VOG3412, VOG4918, VOG0054, VOG7888, VOG4705, VOG4599, VOG4605, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG5601, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841 |
| CNIOKLJP_22 | 95418 | 106287 | False | Siphoviridae | VOG4589, VOG0204, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4609, VOG4632, VOG4632 |
Phigaro v2.4.0 (Database: Jan. 2024 release)