Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NIEBEHDK_94 | 138440 | 137736 | WalR | 2.06e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| NIEBEHDK_39 | 295286 | 295483 | CspR | 1.75e-32 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| NIEBEHDK_62 | 6373 | 7431 | repUS75 | 1059 / 1059 | 96.60 | CP002393 |
| NIEBEHDK_90 | 1257 | 1755 | repUS54 | 500 / 690 | 85.00 | EU185047 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NIEBEHDK_11 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_22 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_31 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_32 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_33 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_34 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_35 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_36 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_37 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_38 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_39 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_40 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_41 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_42 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_43 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_44 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_45 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_46 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_47 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_48 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_49 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_50 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_51 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_52 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_53 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_54 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_55 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_56 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_57 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_58 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_59 | 1.0 | 0.0 | 1.0 |
| NIEBEHDK_60 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_61 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_62 | 1.0 | 0.0 | 1.0 |
| NIEBEHDK_63 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_64 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_65 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_66 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_67 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_68 | 1.0 | 0.0 | 1.0 |
| NIEBEHDK_69 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_70 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_71 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_72 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_73 | 1.0 | 0.0 | 1.0 |
| NIEBEHDK_74 | 1.0 | 0.0 | 1.0 |
| NIEBEHDK_75 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_76 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_77 | 1.0 | 0.0 | 1.0 |
| NIEBEHDK_79 | 1.0 | 0.0 | 1.0 |
| NIEBEHDK_80 | 1.0 | 0.0 | 1.0 |
| NIEBEHDK_81 | 1.0 | 0.0 | 1.0 |
| NIEBEHDK_82 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_83 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_84 | 1.0 | 0.0 | 1.0 |
| NIEBEHDK_85 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_86 | 1.0 | 0.0 | 1.0 |
| NIEBEHDK_87 | 1.0 | 0.0 | 1.0 |
| NIEBEHDK_88 | 1.0 | 0.0 | 1.0 |
| NIEBEHDK_89 | 1.0 | 0.0 | 1.0 |
| NIEBEHDK_90 | 1.0 | 0.0 | 1.0 |
| NIEBEHDK_91 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_93 | 1.0 | 0.0 | 1.0 |
| NIEBEHDK_94 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_95 | 1.0 | 0.0 | 1.0 |
| NIEBEHDK_96 | 1.0 | 0.0 | 1.0 |
| NIEBEHDK_97 | 1.0 | 0.0 | 1.0 |
| NIEBEHDK_98 | 1.0 | 0.0 | 1.0 |
| NIEBEHDK_99 | 1.0 | 0.0 | 1.0 |
| NIEBEHDK_100 | 1.0 | 0.0 | 1.0 |
| NIEBEHDK_101 | 1.0 | 0.0 | 1.0 |
| NIEBEHDK_102 | 1.0 | 0.0 | 1.0 |
| NIEBEHDK_103 | 1.0 | 0.0 | 1.0 |
| NIEBEHDK_104 | 1.0 | 0.0 | 1.0 |
| NIEBEHDK_105 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_116 | 0.0 | 1.0 | 0.0 |
| NIEBEHDK_127 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NIEBEHDK_39 | 4708 | 42310 | False | Siphoviridae | VOG6495, VOG4552, VOG4552, VOG3711, VOG3459, VOG0181, VOG10867, VOG4967, VOG3642, VOG0321, VOG0322, VOG0226, VOG4799, VOG0025, VOG7735, VOG4693, VOG4813, VOG9759, VOG2820, VOG3643, VOG3643, VOG0044, VOG0198, VOG4549, VOG4841, VOG4581, VOG4544, VOG3644, VOG4556, VOG4568, VOG4553, VOG5601, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG4605, VOG4599, VOG4705, VOG7888, VOG0054, VOG4918 |
| NIEBEHDK_39 | 212062 | 222931 | False | Siphoviridae | VOG4632, VOG4632, VOG4609, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204, VOG4589 |
Phigaro v2.4.0 (Database: Jan. 2024 release)