safety

PPRS ARGs VFs PGs Plasmid Prophage IS elements

ARGs	VFs	PGs	PPRS
7	0	0	7.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Comprehensive Antibiotic Resistance Database (CARD)

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
DOOMIPKP_1	1085687	1086418	ErmA	ARO:3000347	ErmA	85.19	100.00	X03216.1
DOOMIPKP_1	994700	996622	tet(W)	ARO:3000194	tet(W)	96.55	100.16	AJ222769.3
DOOMIPKP_1	144433	145170	ErmT	ARO:3000595	ErmT	97.93	100.41	M64090.1
DOOMIPKP_1	143465	144112	catA8	ARO:3004658	catA8	96.74	100.00	JQ922409.1
DOOMIPKP_1	30941	31615	ErmB	ARO:3000375	ErmB	98.66	90.32	AF242872.1
DOOMIPKP_1	30184	30828	vatE	ARO:3002844	vatE	100.00	100.00	AF242872.1
DOOMIPKP_1	26929	27675	ErmB	ARO:3000375	ErmB	99.19	100.00	AF242872.1

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
DOOMIPKP_1	1085687	1086418	erm(A)	Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S	100.00	100.00	EU348758
DOOMIPKP_1	30184	30828	vat(E)	Dalfopristin, Pristinamycin IIA, Virginiamycin M	100.00	100.00	AJ488494
DOOMIPKP_1	26929	27675	erm(B)	Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S	99.73	100.00	AF242872
DOOMIPKP_1	144443	145170	erm(T)	Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S	99.18	98.91	AF310974
DOOMIPKP_1	994709	996622	tet(W)	Doxycycline, Tetracycline, Minocycline	98.90	99.69	FN396364
DOOMIPKP_1	143465	144112	cat	Chloramphenicol	98.77	100.00	U35036

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
DOOMIPKP_1	30184	30825	vat(E)	streptogramin A O-acetyltransferase Vat(E)	EXACTX	100.00	100.00	WP_002328813.1
DOOMIPKP_1	994709	996622	tet(W)	tetracycline resistance ribosomal protection protein Tet(W)	BLASTX	99.37	99.84	WP_000691721.1
DOOMIPKP_1	26929	27672	erm(B)	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	BLASTX	99.19	100.00	WP_032489723.1
DOOMIPKP_1	30896	31612	erm(B)	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	BLASTX	98.33	96.37	WP_032489723.1
DOOMIPKP_1	144448	145170	erm(T)	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(T)	BLASTX	97.93	98.77	WP_002345002.1
DOOMIPKP_1	143465	144109	catA	type A-8 chloramphenicol O-acetyltransferase	BLASTX	97.21	100.00	WP_002352254.1
DOOMIPKP_1	1085693	1086418	erm(A)	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	BLASTX	85.54	99.59	WP_001072197.1

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
No hit found

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

PlasmidFinder

Query ID	Begin	End	Plasmid	Query / Template	Identity	Accession no.
No hit found

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID	Prediction	Chromosome	Plasmid
DOOMIPKP_1	0.0	1.0	0.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Phigaro

Query ID	Begin	End	Transposable	Taxonomy	pVOGs
DOOMIPKP_1	824419	851300	False	Siphoviridae	VOG0283, VOG4799, VOG10309, VOG4555, VOG0198, VOG0796, VOG4544, VOG0691, VOG0692, VOG4555, VOG0694, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG6163, VOG0801, VOG4619, VOG10913, VOG5008

Phigaro v2.4.0 (Database: Jan. 2024 release)