Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HJGNFMLH_1 | 1838597 | 1839082 | lnuA | ARO:3002835 | lnuA | 97.52 | 100.00 | M14039.1 |
| HJGNFMLH_1 | 1791613 | 1793538 | tet(W) | ARO:3000194 | tet(W) | 96.24 | 100.31 | AJ222769.3 |
| HJGNFMLH_1 | 1789177 | 1789923 | ErmB | ARO:3000375 | ErmB | 98.39 | 100.00 | AF242872.1 |
| HJGNFMLH_1 | 1788526 | 1789176 | Streptococcus suis chloramphenicol acetyltransferase | ARO:3004455 | Ssui_ACT_CHL | 94.91 | 100.00 | AB080798.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HJGNFMLH_1 | 1830881 | 1831747 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | KF864551 |
| HJGNFMLH_1 | 1788526 | 1789176 | cat(pC194) | Chloramphenicol | 100.00 | 100.00 | NC_002013 |
| HJGNFMLH_1 | 1789177 | 1789923 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.46 | 100.00 | AF242872 |
| HJGNFMLH_1 | 1791613 | 1793525 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.80 | 99.64 | FN396364 |
| HJGNFMLH_1 | 1838597 | 1839082 | lnu(A) | Lincomycin | 98.56 | 100.00 | M14039 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HJGNFMLH_1 | 1830881 | 1831744 | aadE | aminoglycoside 6-adenylyltransferase AadE | EXACTX | 100.00 | 100.00 | WP_001255868.1 |
| HJGNFMLH_1 | 1788526 | 1789173 | catA | type A-9 chloramphenicol O-acetyltransferase | EXACTX | 100.00 | 100.00 | WP_001010387.1 |
| HJGNFMLH_1 | 1838597 | 1839079 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | EXACTX | 100.00 | 100.00 | WP_001829870.1 |
| HJGNFMLH_1 | 1791613 | 1793526 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.37 | 99.84 | WP_003672618.1 |
| HJGNFMLH_1 | 1789177 | 1789920 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.19 | 100.00 | WP_063844850.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HJGNFMLH_1 | 239918 | 240907 | repUS67 | 1002 / 1039 | 86.33 | CP006012 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HJGNFMLH_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HJGNFMLH_1 | 8743 | 47020 | False | Siphoviridae | VOG0641, VOG0648, VOG7145, VOG10608, VOG1335, VOG6163, VOG1334, VOG1333, VOG4634, VOG0704, VOG1900, VOG1330, VOG1887, VOG3434, VOG4555, VOG4564, VOG0720, VOG4544, VOG0796, VOG9503, VOG0689, VOG0686, VOG0198, VOG4693, VOG1183, VOG0686, VOG7884, VOG3307, VOG1298, VOG4566, VOG0186, VOG1309, VOG1638, VOG0052, VOG8520, VOG0862, VOG0047, VOG0348 |
| HJGNFMLH_1 | 249471 | 261824 | False | Myoviridae | VOG6524, VOG6246, VOG6941, VOG6036, VOG7629, VOG7628, VOG5534, VOG6540, VOG1799, VOG0648, VOG0753, VOG0054 |
| HJGNFMLH_1 | 914362 | 938043 | False | Siphoviridae | VOG10593, VOG4887, VOG3462, VOG0801, VOG6163, VOG9471, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4568, VOG4556, VOG0202, VOG4544, VOG4581, VOG4841, VOG0866, VOG0198, VOG7111, VOG0686 |
| HJGNFMLH_1 | 1164742 | 1187385 | False | Siphoviridae | VOG0641, VOG6886, VOG5008, VOG4910, VOG4633, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1319, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG0796, VOG0198 |
| HJGNFMLH_1 | 2060467 | 2076588 | True | Unknown | VOG1026, VOG5088, VOG0979, VOG0979, VOG0979, VOG0979, VOG10273, VOG5088, VOG5088, VOG4357, VOG4357, VOG0979, VOG0979, VOG5088, VOG0979, VOG0979, VOG0979, VOG0979, VOG0979, VOG1026, VOG4357, VOG2786, VOG4357 |
Phigaro v2.4.0 (Database: Jan. 2024 release)