Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 2 | 2 | 2.83 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| KNAFHFMF_47 | 3325 | 4291 | STR_RS05220 | 0.0 | Capsule | Immune modulation | 94.85 | 99.28 | WP_011227240 |
| KNAFHFMF_47 | 1154 | 2221 | STR_RS05215 | 0.0 | Capsule | Immune modulation | 94.29 | 98.61 | WP_011227239 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KNAFHFMF_15 | 237286 | 236582 | WalR | 1.72e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| KNAFHFMF_8 | 65263 | 65069 | CspR | 3.11e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| KNAFHFMF_8 | 65263 | 65066 | CspA | 4.77e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| KNAFHFMF_40 | 752 | 1687 | rep28 | 936 / 936 | 100.00 | CP005948 |
| KNAFHFMF_64 | 241 | 1197 | repUS64 | 958 / 954 | 92.17 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KNAFHFMF_2 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_4 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_5 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_6 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_7 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_8 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_11 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_12 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_13 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_14 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_15 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_16 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_17 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_18 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_19 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_20 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_21 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_22 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_23 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_24 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_25 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_26 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_27 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_28 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_29 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_30 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_31 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_32 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_33 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_34 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_35 | 1.0 | 0.0 | 1.0 |
| KNAFHFMF_36 | 1.0 | 0.0 | 1.0 |
| KNAFHFMF_37 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_38 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_39 | 1.0 | 0.0 | 1.0 |
| KNAFHFMF_40 | 1.0 | 0.0 | 1.0 |
| KNAFHFMF_41 | 1.0 | 0.0 | 1.0 |
| KNAFHFMF_42 | 1.0 | 0.0 | 1.0 |
| KNAFHFMF_43 | 1.0 | 0.0 | 1.0 |
| KNAFHFMF_44 | 1.0 | 0.0 | 1.0 |
| KNAFHFMF_45 | 1.0 | 0.0 | 1.0 |
| KNAFHFMF_46 | 1.0 | 0.0 | 1.0 |
| KNAFHFMF_47 | 1.0 | 0.0 | 1.0 |
| KNAFHFMF_48 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_49 | 1.0 | 0.0 | 1.0 |
| KNAFHFMF_50 | 1.0 | 0.0 | 1.0 |
| KNAFHFMF_51 | 1.0 | 0.0 | 1.0 |
| KNAFHFMF_52 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_53 | 1.0 | 0.0 | 1.0 |
| KNAFHFMF_54 | 1.0 | 0.0 | 1.0 |
| KNAFHFMF_55 | 1.0 | 0.0 | 1.0 |
| KNAFHFMF_56 | 1.0 | 0.0 | 1.0 |
| KNAFHFMF_57 | 1.0 | 0.0 | 1.0 |
| KNAFHFMF_58 | 1.0 | 0.0 | 1.0 |
| KNAFHFMF_59 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_60 | 1.0 | 0.0 | 1.0 |
| KNAFHFMF_62 | 1.0 | 0.0 | 1.0 |
| KNAFHFMF_63 | 1.0 | 0.0 | 1.0 |
| KNAFHFMF_64 | 1.0 | 0.0 | 1.0 |
| KNAFHFMF_65 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_66 | 1.0 | 0.0 | 1.0 |
| KNAFHFMF_67 | 1.0 | 0.0 | 1.0 |
| KNAFHFMF_68 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_69 | 1.0 | 0.0 | 1.0 |
| KNAFHFMF_70 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_72 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_73 | 1.0 | 0.0 | 1.0 |
| KNAFHFMF_74 | 1.0 | 0.0 | 1.0 |
| KNAFHFMF_75 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_76 | 1.0 | 0.0 | 1.0 |
| KNAFHFMF_77 | 1.0 | 0.0 | 1.0 |
| KNAFHFMF_78 | 1.0 | 0.0 | 1.0 |
| KNAFHFMF_79 | 1.0 | 0.0 | 1.0 |
| KNAFHFMF_81 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_91 | 0.0 | 1.0 | 0.0 |
| KNAFHFMF_96 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KNAFHFMF_14 | 46478 | 48452 | False | Unknown | VOG0650, VOG0275 |
| KNAFHFMF_48 | 36835 | 54106 | False | Siphoviridae | VOG4632, VOG4609, VOG6414, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204, VOG0198, VOG0275, VOG1012, VOG8491, VOG3744 |
| KNAFHFMF_48 | 65415 | 88451 | False | Siphoviridae | VOG0686, VOG0611, VOG0691, VOG0692, VOG9317, VOG4711, VOG0695, VOG0696, VOG0697, VOG6548, VOG9763, VOG0701, VOG6163, VOG0801, VOG4619, VOG8438, VOG0870, VOG0804, VOG4705 |
| KNAFHFMF_70 | 81434 | 113010 | False | Siphoviridae | VOG0685, VOG0322, VOG6545, VOG0514, VOG8647, VOG0189, VOG4693, VOG4571, VOG0044, VOG3643, VOG1049, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG10957, VOG8870 |
Phigaro v2.4.0 (Database: Jan. 2024 release)