Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 2 | 2 | 2.83 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| MCPDCLDH_48 | 3325 | 4291 | STR_RS05220 | 0.0 | Capsule | Immune modulation | 94.85 | 99.28 | WP_011227240 |
| MCPDCLDH_48 | 1154 | 2221 | STR_RS05215 | 0.0 | Capsule | Immune modulation | 94.29 | 98.61 | WP_011227239 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MCPDCLDH_14 | 237286 | 236582 | WalR | 1.72e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| MCPDCLDH_9 | 65263 | 65069 | CspR | 3.11e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| MCPDCLDH_9 | 65263 | 65066 | CspA | 4.77e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| MCPDCLDH_39 | 752 | 1687 | rep28 | 936 / 936 | 100.00 | CP005948 |
| MCPDCLDH_63 | 241 | 1197 | repUS64 | 958 / 954 | 92.17 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MCPDCLDH_2 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_3 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_6 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_7 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_8 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_9 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_10 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_11 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_12 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_13 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_14 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_15 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_16 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_17 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_18 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_19 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_20 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_21 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_22 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_23 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_24 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_25 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_26 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_27 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_28 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_29 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_30 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_31 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_32 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_33 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_34 | 1.0 | 0.0 | 1.0 |
| MCPDCLDH_35 | 1.0 | 0.0 | 1.0 |
| MCPDCLDH_36 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_37 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_38 | 1.0 | 0.0 | 1.0 |
| MCPDCLDH_39 | 1.0 | 0.0 | 1.0 |
| MCPDCLDH_40 | 1.0 | 0.0 | 1.0 |
| MCPDCLDH_41 | 1.0 | 0.0 | 1.0 |
| MCPDCLDH_42 | 1.0 | 0.0 | 1.0 |
| MCPDCLDH_43 | 1.0 | 0.0 | 1.0 |
| MCPDCLDH_44 | 1.0 | 0.0 | 1.0 |
| MCPDCLDH_45 | 1.0 | 0.0 | 1.0 |
| MCPDCLDH_46 | 1.0 | 0.0 | 1.0 |
| MCPDCLDH_47 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_48 | 1.0 | 0.0 | 1.0 |
| MCPDCLDH_49 | 1.0 | 0.0 | 1.0 |
| MCPDCLDH_50 | 1.0 | 0.0 | 1.0 |
| MCPDCLDH_51 | 1.0 | 0.0 | 1.0 |
| MCPDCLDH_52 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_53 | 1.0 | 0.0 | 1.0 |
| MCPDCLDH_54 | 1.0 | 0.0 | 1.0 |
| MCPDCLDH_55 | 1.0 | 0.0 | 1.0 |
| MCPDCLDH_56 | 1.0 | 0.0 | 1.0 |
| MCPDCLDH_57 | 1.0 | 0.0 | 1.0 |
| MCPDCLDH_58 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_59 | 1.0 | 0.0 | 1.0 |
| MCPDCLDH_61 | 1.0 | 0.0 | 1.0 |
| MCPDCLDH_62 | 1.0 | 0.0 | 1.0 |
| MCPDCLDH_63 | 1.0 | 0.0 | 1.0 |
| MCPDCLDH_64 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_65 | 1.0 | 0.0 | 1.0 |
| MCPDCLDH_66 | 1.0 | 0.0 | 1.0 |
| MCPDCLDH_67 | 1.0 | 0.0 | 1.0 |
| MCPDCLDH_69 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_70 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_71 | 1.0 | 0.0 | 1.0 |
| MCPDCLDH_72 | 1.0 | 0.0 | 1.0 |
| MCPDCLDH_73 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_74 | 1.0 | 0.0 | 1.0 |
| MCPDCLDH_75 | 1.0 | 0.0 | 1.0 |
| MCPDCLDH_76 | 1.0 | 0.0 | 1.0 |
| MCPDCLDH_77 | 1.0 | 0.0 | 1.0 |
| MCPDCLDH_80 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_91 | 0.0 | 1.0 | 0.0 |
| MCPDCLDH_95 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MCPDCLDH_13 | 46478 | 48452 | False | Unknown | VOG0650, VOG0275 |
| MCPDCLDH_47 | 36835 | 54106 | False | Siphoviridae | VOG4632, VOG4609, VOG6414, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204, VOG0198, VOG0275, VOG1012, VOG8491, VOG3744 |
| MCPDCLDH_47 | 65415 | 88451 | False | Siphoviridae | VOG0686, VOG0611, VOG0691, VOG0692, VOG9317, VOG4711, VOG0695, VOG0696, VOG0697, VOG6548, VOG9763, VOG0701, VOG6163, VOG0801, VOG4619, VOG8438, VOG0870, VOG0804, VOG4705 |
| MCPDCLDH_69 | 81434 | 113010 | False | Siphoviridae | VOG0685, VOG0322, VOG6545, VOG0514, VOG8647, VOG0189, VOG4693, VOG4571, VOG0044, VOG3643, VOG1049, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG10957, VOG8870 |
Phigaro v2.4.0 (Database: Jan. 2024 release)