Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HCNPMNJF_13 | 306558 | 305854 | WalR | 2.10e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| HCNPMNJF_4 | 5245 | 5439 | CspR | 3.18e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| HCNPMNJF_4 | 5245 | 5442 | CspA | 4.87e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HCNPMNJF_40 | 752 | 1687 | rep28 | 936 / 936 | 100.00 | CP005948 |
| HCNPMNJF_59 | 463 | 1419 | repUS64 | 958 / 954 | 92.07 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HCNPMNJF_1 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_3 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_4 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_6 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_7 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_8 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_9 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_10 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_11 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_12 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_13 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_14 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_15 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_16 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_17 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_18 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_19 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_20 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_21 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_22 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_23 | 1.0 | 0.0 | 1.0 |
| HCNPMNJF_24 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_25 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_26 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_27 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_28 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_29 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_30 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_31 | 1.0 | 0.0 | 1.0 |
| HCNPMNJF_32 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_33 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_34 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_35 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_36 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_37 | 1.0 | 0.0 | 1.0 |
| HCNPMNJF_38 | 1.0 | 0.0 | 1.0 |
| HCNPMNJF_39 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_40 | 1.0 | 0.0 | 1.0 |
| HCNPMNJF_41 | 1.0 | 0.0 | 1.0 |
| HCNPMNJF_42 | 1.0 | 0.0 | 1.0 |
| HCNPMNJF_43 | 1.0 | 0.0 | 1.0 |
| HCNPMNJF_44 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_45 | 1.0 | 0.0 | 1.0 |
| HCNPMNJF_46 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_47 | 1.0 | 0.0 | 1.0 |
| HCNPMNJF_48 | 1.0 | 0.0 | 1.0 |
| HCNPMNJF_49 | 1.0 | 0.0 | 1.0 |
| HCNPMNJF_50 | 1.0 | 0.0 | 1.0 |
| HCNPMNJF_51 | 1.0 | 0.0 | 1.0 |
| HCNPMNJF_52 | 1.0 | 0.0 | 1.0 |
| HCNPMNJF_53 | 1.0 | 0.0 | 1.0 |
| HCNPMNJF_55 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_56 | 1.0 | 0.0 | 1.0 |
| HCNPMNJF_57 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_58 | 1.0 | 0.0 | 1.0 |
| HCNPMNJF_59 | 1.0 | 0.0 | 1.0 |
| HCNPMNJF_60 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_61 | 1.0 | 0.0 | 1.0 |
| HCNPMNJF_62 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_64 | 1.0 | 0.0 | 1.0 |
| HCNPMNJF_65 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_66 | 1.0 | 0.0 | 1.0 |
| HCNPMNJF_67 | 1.0 | 0.0 | 1.0 |
| HCNPMNJF_68 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_69 | 1.0 | 0.0 | 1.0 |
| HCNPMNJF_70 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_71 | 1.0 | 0.0 | 1.0 |
| HCNPMNJF_72 | 1.0 | 0.0 | 1.0 |
| HCNPMNJF_79 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_87 | 0.0 | 1.0 | 0.0 |
| HCNPMNJF_90 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HCNPMNJF_6 | 3847 | 7747 | False | Unknown | VOG0535, VOG0650, VOG3549, VOG8426, VOG3622, VOG9667 |
| HCNPMNJF_12 | 46478 | 48452 | False | Unknown | VOG0650, VOG0275 |
| HCNPMNJF_20 | 2464 | 24459 | False | Siphoviridae | VOG0796, VOG4544, VOG0691, VOG0692, VOG4555, VOG4572, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG4910, VOG0801, VOG4619, VOG9531, VOG9657, VOG8294, VOG1637 |
| HCNPMNJF_23 | 15111 | 37267 | False | Siphoviridae | VOG8870, VOG10957, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581 |
| HCNPMNJF_57 | 76013 | 86858 | False | Siphoviridae | VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG6414, VOG4609, VOG4632 |
Phigaro v2.4.0 (Database: Jan. 2024 release)