Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HNCLKEEJ_66 | 40137 | 42062 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| HNCLKEEJ_4 | 34226 | 35128 | cepA | ARO:3003559 | cepA | 99.67 | 100.00 | U05883.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HNCLKEEJ_4 | 34226 | 35128 | cepA-49 | Unknown Beta-lactam | 99.89 | 100.00 | U05886 |
| HNCLKEEJ_66 | 40137 | 42062 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| HNCLKEEJ_38 | 1795 | 2549 | cfxA6 | Unknown Beta-lactam | 87.17 | 75.70 | GQ342996 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HNCLKEEJ_4 | 34229 | 35128 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.67 | 100.00 | WP_005795628.1 |
| HNCLKEEJ_66 | 40137 | 42059 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| HNCLKEEJ_38 | 1654 | 2598 | cfxA6 | broad-spectrum class A beta-lactamase CfxA6 | BLASTX | 80.00 | 98.44 | WP_117664257.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HNCLKEEJ_41 | 67 | 746 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HNCLKEEJ_1 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_2 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_3 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_4 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_5 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_6 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_7 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_8 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_9 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_10 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_11 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_12 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_13 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_14 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_15 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_16 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_17 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_18 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_19 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_20 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_21 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_22 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_23 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_24 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_25 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_26 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_27 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_28 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_29 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_30 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_31 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_32 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_33 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_34 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_35 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_36 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_37 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_38 | 1.0 | 0.0 | 1.0 |
| HNCLKEEJ_39 | 1.0 | 0.0 | 1.0 |
| HNCLKEEJ_41 | 1.0 | 0.0 | 1.0 |
| HNCLKEEJ_42 | 1.0 | 0.0 | 1.0 |
| HNCLKEEJ_43 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_44 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_45 | 1.0 | 0.0 | 1.0 |
| HNCLKEEJ_55 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_66 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_75 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_76 | 0.0 | 1.0 | 0.0 |
| HNCLKEEJ_77 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HNCLKEEJ_9 | 12524 | 21379 | False | Siphoviridae | VOG7238, |
| HNCLKEEJ_27 | 8289 | 21527 | False | Unknown | VOG3007, |
Phigaro v2.4.0 (Database: Jan. 2024 release)