Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 2 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HOKMOGFC_39 | 724 | 1515 | aadA | ARO:3002601 | aadA | 100.00 | 127.76 | AF550679.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HOKMOGFC_39 | 727 | 1515 | aadA1 | ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1 | EXACTX | 100.00 | 100.00 | WP_001206316.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HOKMOGFC_8 | 177382 | 176678 | WalR | 1.03e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| HOKMOGFC_1 | 393647 | 393841 | CspR | 2.14e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| HOKMOGFC_1 | 393647 | 393844 | CspA | 3.28e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HOKMOGFC_21 | 6773 | 7870 | repUS73 | 1101 / 1101 | 93.91 | CP002654 |
| HOKMOGFC_39 | 186 | 316 | ColRNAI | 131 / 130 | 87.02 | DQ298019 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HOKMOGFC_1 | 0.0 | 1.0 | 0.0 |
| HOKMOGFC_2 | 0.0 | 1.0 | 0.0 |
| HOKMOGFC_3 | 0.0 | 1.0 | 0.0 |
| HOKMOGFC_4 | 0.0 | 1.0 | 0.0 |
| HOKMOGFC_5 | 0.0 | 1.0 | 0.0 |
| HOKMOGFC_6 | 0.0 | 1.0 | 0.0 |
| HOKMOGFC_7 | 0.0 | 1.0 | 0.0 |
| HOKMOGFC_8 | 0.0 | 1.0 | 0.0 |
| HOKMOGFC_9 | 0.0 | 1.0 | 0.0 |
| HOKMOGFC_10 | 0.0 | 1.0 | 0.0 |
| HOKMOGFC_11 | 0.0 | 1.0 | 0.0 |
| HOKMOGFC_12 | 0.0 | 1.0 | 0.0 |
| HOKMOGFC_13 | 0.0 | 1.0 | 0.0 |
| HOKMOGFC_14 | 0.0 | 1.0 | 0.0 |
| HOKMOGFC_15 | 0.0 | 1.0 | 0.0 |
| HOKMOGFC_16 | 0.0 | 1.0 | 0.0 |
| HOKMOGFC_17 | 0.0 | 1.0 | 0.0 |
| HOKMOGFC_18 | 0.0 | 1.0 | 0.0 |
| HOKMOGFC_19 | 0.0 | 1.0 | 0.0 |
| HOKMOGFC_20 | 0.0 | 1.0 | 0.0 |
| HOKMOGFC_21 | 1.0 | 0.0 | 1.0 |
| HOKMOGFC_22 | 0.0 | 1.0 | 0.0 |
| HOKMOGFC_23 | 1.0 | 0.0 | 1.0 |
| HOKMOGFC_24 | 1.0 | 0.0 | 1.0 |
| HOKMOGFC_25 | 0.0 | 1.0 | 0.0 |
| HOKMOGFC_26 | 1.0 | 0.0 | 1.0 |
| HOKMOGFC_27 | 0.0 | 1.0 | 0.0 |
| HOKMOGFC_28 | 1.0 | 0.0 | 1.0 |
| HOKMOGFC_29 | 1.0 | 0.0 | 1.0 |
| HOKMOGFC_30 | 0.0 | 1.0 | 0.0 |
| HOKMOGFC_31 | 1.0 | 0.0 | 1.0 |
| HOKMOGFC_32 | 1.0 | 0.0 | 1.0 |
| HOKMOGFC_33 | 1.0 | 0.0 | 1.0 |
| HOKMOGFC_35 | 1.0 | 0.0 | 1.0 |
| HOKMOGFC_36 | 0.0 | 1.0 | 0.0 |
| HOKMOGFC_37 | 1.0 | 0.0 | 1.0 |
| HOKMOGFC_38 | 1.0 | 0.0 | 1.0 |
| HOKMOGFC_39 | 1.0 | 0.0 | 1.0 |
| HOKMOGFC_41 | 1.0 | 0.0 | 1.0 |
| HOKMOGFC_42 | 0.0 | 1.0 | 0.0 |
| HOKMOGFC_43 | 0.0 | 1.0 | 0.0 |
| HOKMOGFC_44 | 1.0 | 0.0 | 1.0 |
| HOKMOGFC_45 | 1.0 | 0.0 | 1.0 |
| HOKMOGFC_46 | 1.0 | 0.0 | 1.0 |
| HOKMOGFC_48 | 1.0 | 0.0 | 1.0 |
| HOKMOGFC_49 | 1.0 | 0.0 | 1.0 |
| HOKMOGFC_50 | 1.0 | 0.0 | 1.0 |
| HOKMOGFC_51 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HOKMOGFC_1 | 76843 | 100262 | False | Siphoviridae | VOG6179, VOG0198, VOG0796, VOG4544, VOG0691, VOG0692, VOG4555, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG4910, VOG0801, VOG4619, VOG3463, VOG1637, VOG4626, VOG4334, VOG4705, VOG3325 |
| HOKMOGFC_4 | 116822 | 150942 | False | Siphoviridae | VOG1637, VOG8294, VOG3498, VOG10608, VOG1335, VOG4545, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG10914, VOG4564, VOG7038, VOG0720, VOG4544, VOG0796, VOG0198, VOG4693, VOG4566, VOG0186, VOG1309, VOG7298, VOG0181, VOG6495 |
| HOKMOGFC_4 | 180323 | 211765 | False | Siphoviridae | VOG8868, VOG7896, VOG4334, VOG4626, VOG4904, VOG7548, VOG3462, VOG0801, VOG6163, VOG0725, VOG0799, VOG0724, VOG5660, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG1183, VOG1315, VOG0198, VOG9671, VOG0044, VOG6970, VOG1297, VOG3468, VOG3480, VOG0327, VOG0189, VOG5046, VOG0535, VOG2703, VOG3549 |
Phigaro v2.4.0 (Database: Jan. 2024 release)