Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PJNIDHIE_24 | 8110 | 10029 | tet(W) | ARO:3000194 | tet(W) | 96.87 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PJNIDHIE_24 | 8110 | 10029 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.01 | 100.00 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PJNIDHIE_24 | 8113 | 10029 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.69 | 100.00 | WP_000691721.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PJNIDHIE_130 | 43886 | 44080 | CspA | 2.93e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PJNIDHIE_24 | 2217 | 2993 | rep30 | 777 / 777 | 100.00 | CP002845 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PJNIDHIE_24 | 1.0 | 0.0 | 1.0 |
| PJNIDHIE_25 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_34 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_35 | 1.0 | 0.0 | 1.0 |
| PJNIDHIE_36 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_37 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_46 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_48 | 1.0 | 0.0 | 1.0 |
| PJNIDHIE_57 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_64 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_65 | 1.0 | 0.0 | 1.0 |
| PJNIDHIE_66 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_76 | 1.0 | 0.0 | 1.0 |
| PJNIDHIE_84 | 1.0 | 0.0 | 1.0 |
| PJNIDHIE_106 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_107 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_108 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_109 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_110 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_111 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_114 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_115 | 1.0 | 0.0 | 1.0 |
| PJNIDHIE_116 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_117 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_118 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_119 | 1.0 | 0.0 | 1.0 |
| PJNIDHIE_120 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_121 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_122 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_123 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_125 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_126 | 1.0 | 0.0 | 1.0 |
| PJNIDHIE_127 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_128 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_129 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_130 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_131 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_132 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_133 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_134 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_136 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_137 | 1.0 | 0.0 | 1.0 |
| PJNIDHIE_138 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_139 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_140 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_141 | 1.0 | 0.0 | 1.0 |
| PJNIDHIE_142 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_143 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_144 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_145 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_147 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_148 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_149 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_150 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_151 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_152 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_175 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_196 | 1.0 | 0.0 | 1.0 |
| PJNIDHIE_208 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_215 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_216 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_227 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_228 | 0.0 | 1.0 | 0.0 |
| PJNIDHIE_234 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PJNIDHIE_140 | 5471 | 33242 | False | Siphoviridae | VOG0703, VOG8917, VOG7100, VOG4887, VOG4205, VOG3463, VOG3462, VOG0801, VOG6163, VOG0209, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG0866, VOG9312, VOG4581, VOG4841, VOG0866, VOG0198, VOG6140 |
| PJNIDHIE_147 | 88403 | 105753 | False | Siphoviridae | VOG0275, VOG0650, VOG5458, VOG0267, VOG4632, VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG0204, VOG0198, VOG4714, VOG3490 |
Phigaro v2.4.0 (Database: Jan. 2024 release)