Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DKPHDLPF_63 | 13390 | 12686 | WalR | 1.87e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| DKPHDLPF_54 | 290720 | 290917 | CspR | 1.55e-32 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DKPHDLPF_11 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_22 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_33 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_36 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_37 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_38 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_39 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_40 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_41 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_42 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_43 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_44 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_45 | 1.0 | 0.0 | 1.0 |
| DKPHDLPF_46 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_47 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_48 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_49 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_50 | 1.0 | 0.0 | 1.0 |
| DKPHDLPF_51 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_52 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_53 | 1.0 | 0.0 | 1.0 |
| DKPHDLPF_54 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_55 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_56 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_57 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_58 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_59 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_60 | 1.0 | 0.0 | 1.0 |
| DKPHDLPF_61 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_62 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_63 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_64 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_65 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_66 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_67 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_68 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_69 | 1.0 | 0.0 | 1.0 |
| DKPHDLPF_70 | 1.0 | 0.0 | 1.0 |
| DKPHDLPF_71 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_72 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_73 | 1.0 | 0.0 | 1.0 |
| DKPHDLPF_74 | 1.0 | 0.0 | 1.0 |
| DKPHDLPF_75 | 1.0 | 0.0 | 1.0 |
| DKPHDLPF_76 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_77 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_78 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_79 | 1.0 | 0.0 | 1.0 |
| DKPHDLPF_80 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_81 | 1.0 | 0.0 | 1.0 |
| DKPHDLPF_82 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_83 | 1.0 | 0.0 | 1.0 |
| DKPHDLPF_84 | 1.0 | 0.0 | 1.0 |
| DKPHDLPF_85 | 1.0 | 0.0 | 1.0 |
| DKPHDLPF_86 | 1.0 | 0.0 | 1.0 |
| DKPHDLPF_87 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_88 | 1.0 | 0.0 | 1.0 |
| DKPHDLPF_89 | 1.0 | 0.0 | 1.0 |
| DKPHDLPF_91 | 1.0 | 0.0 | 1.0 |
| DKPHDLPF_92 | 1.0 | 0.0 | 1.0 |
| DKPHDLPF_93 | 1.0 | 0.0 | 1.0 |
| DKPHDLPF_94 | 1.0 | 0.0 | 1.0 |
| DKPHDLPF_95 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_96 | 1.0 | 0.0 | 1.0 |
| DKPHDLPF_97 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_98 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_99 | 1.0 | 0.0 | 1.0 |
| DKPHDLPF_100 | 1.0 | 0.0 | 1.0 |
| DKPHDLPF_102 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_103 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_104 | 1.0 | 0.0 | 1.0 |
| DKPHDLPF_105 | 1.0 | 0.0 | 1.0 |
| DKPHDLPF_106 | 1.0 | 0.0 | 1.0 |
| DKPHDLPF_107 | 1.0 | 0.0 | 1.0 |
| DKPHDLPF_108 | 1.0 | 0.0 | 1.0 |
| DKPHDLPF_109 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_110 | 1.0 | 0.0 | 1.0 |
| DKPHDLPF_111 | 1.0 | 0.0 | 1.0 |
| DKPHDLPF_120 | 0.0 | 1.0 | 0.0 |
| DKPHDLPF_131 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DKPHDLPF_54 | 4706 | 43003 | False | Siphoviridae | VOG4552, VOG10059, VOG0181, VOG10867, VOG3642, VOG4799, VOG0025, VOG7735, VOG4693, VOG9759, VOG0152, VOG3643, VOG1298, VOG0044, VOG0198, VOG0143, VOG10481, VOG4570, VOG4841, VOG4581, VOG4544, VOG3644, VOG4556, VOG4568, VOG4553, VOG8134, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG6163, VOG4605, VOG4599, VOG6455, VOG7896, VOG1637, VOG0703, VOG4918 |
| DKPHDLPF_54 | 210626 | 221618 | False | Siphoviridae | VOG4632, VOG4609, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204, VOG4589 |
Phigaro v2.4.0 (Database: Jan. 2024 release)