Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HJIOGPLE_11 | 396934 | 396230 | WalR | 2.89e-114 | transcriptional regulatory protein | 83.83 | 100.00 | EPH95667 |
| HJIOGPLE_52 | 68379 | 68573 | CspR | 6.40e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| HJIOGPLE_52 | 68379 | 68576 | CspA | 9.82e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HJIOGPLE_19 | 1864 | 2536 | repUS64 | 680 / 954 | 82.35 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HJIOGPLE_1 | 0.0 | 1.0 | 0.0 |
| HJIOGPLE_2 | 0.0 | 1.0 | 0.0 |
| HJIOGPLE_3 | 0.0 | 1.0 | 0.0 |
| HJIOGPLE_4 | 0.0 | 1.0 | 0.0 |
| HJIOGPLE_5 | 0.0 | 1.0 | 0.0 |
| HJIOGPLE_6 | 0.0 | 1.0 | 0.0 |
| HJIOGPLE_7 | 0.0 | 1.0 | 0.0 |
| HJIOGPLE_8 | 0.0 | 1.0 | 0.0 |
| HJIOGPLE_9 | 0.0 | 1.0 | 0.0 |
| HJIOGPLE_10 | 0.0 | 1.0 | 0.0 |
| HJIOGPLE_11 | 0.0 | 1.0 | 0.0 |
| HJIOGPLE_12 | 0.0 | 1.0 | 0.0 |
| HJIOGPLE_13 | 0.0 | 1.0 | 0.0 |
| HJIOGPLE_14 | 0.0 | 1.0 | 0.0 |
| HJIOGPLE_15 | 0.0 | 1.0 | 0.0 |
| HJIOGPLE_16 | 0.0 | 1.0 | 0.0 |
| HJIOGPLE_17 | 1.0 | 0.0 | 1.0 |
| HJIOGPLE_19 | 1.0 | 0.0 | 1.0 |
| HJIOGPLE_20 | 1.0 | 0.0 | 1.0 |
| HJIOGPLE_22 | 0.0 | 1.0 | 0.0 |
| HJIOGPLE_23 | 1.0 | 0.0 | 1.0 |
| HJIOGPLE_24 | 1.0 | 0.0 | 1.0 |
| HJIOGPLE_25 | 1.0 | 0.0 | 1.0 |
| HJIOGPLE_32 | 0.0 | 1.0 | 0.0 |
| HJIOGPLE_42 | 0.0 | 1.0 | 0.0 |
| HJIOGPLE_49 | 0.0 | 1.0 | 0.0 |
| HJIOGPLE_50 | 0.0 | 1.0 | 0.0 |
| HJIOGPLE_51 | 0.0 | 1.0 | 0.0 |
| HJIOGPLE_52 | 0.0 | 1.0 | 0.0 |
| HJIOGPLE_53 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HJIOGPLE_9 | 6122 | 14811 | False | Siphoviridae | VOG5038, VOG4673, VOG8310, VOG0159, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG9667, VOG4548, VOG0321 |
| HJIOGPLE_22 | 143745 | 180528 | False | Siphoviridae | VOG0054, VOG1637, VOG8294, VOG9997, VOG3498, VOG10608, VOG1335, VOG4545, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG10914, VOG4564, VOG0720, VOG4544, VOG0796, VOG0686, VOG5709, VOG0198, VOG4693, VOG4552, VOG0189, VOG5046, VOG0186, VOG1309 |
| HJIOGPLE_32 | 257232 | 294885 | False | Siphoviridae | VOG1191, VOG1521, VOG0054, VOG5615, VOG8294, VOG8868, VOG8870, VOG10957, VOG4599, VOG4605, VOG4545, VOG0660, VOG0209, VOG4586, VOG0207, VOG8239, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG0044, VOG9140, VOG4567, VOG4693, VOG11024, VOG0189, VOG4566, VOG0514, VOG0226, VOG0283, VOG0685, VOG5073 |
| HJIOGPLE_42 | 213 | 16535 | False | Siphoviridae | VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG4763, VOG3498, VOG9997, VOG8917, VOG9888 |
Phigaro v2.4.0 (Database: Jan. 2024 release)