Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LKGHKPBA_218 | 26151 | 26858 | WalR | 2.66e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| LKGHKPBA_245 | 132053 | 131856 | CspR | 1.76e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| LKGHKPBA_245 | 132053 | 131859 | CspA | 3.05e-27 | cold shock protein | 80.00 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LKGHKPBA_1 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_2 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_3 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_4 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_5 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_6 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_7 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_8 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_9 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_10 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_11 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_12 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_13 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_15 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_16 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_18 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_19 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_20 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_21 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_22 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_23 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_24 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_25 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_26 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_27 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_28 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_29 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_30 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_33 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_34 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_35 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_36 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_37 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_38 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_41 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_42 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_44 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_45 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_46 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_47 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_48 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_49 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_51 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_52 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_57 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_58 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_59 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_60 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_61 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_62 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_63 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_64 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_65 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_67 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_69 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_71 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_72 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_73 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_74 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_75 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_76 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_79 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_80 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_81 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_86 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_87 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_90 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_91 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_92 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_93 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_94 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_95 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_96 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_97 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_99 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_102 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_103 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_106 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_107 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_108 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_109 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_110 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_111 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_112 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_113 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_115 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_118 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_119 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_120 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_121 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_123 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_129 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_133 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_134 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_136 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_141 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_143 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_145 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_147 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_148 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_151 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_152 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_156 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_157 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_158 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_161 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_162 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_163 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_164 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_165 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_167 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_168 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_169 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_170 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_171 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_175 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_176 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_177 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_179 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_180 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_181 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_183 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_185 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_187 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_188 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_189 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_190 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_191 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_193 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_194 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_195 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_196 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_198 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_199 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_202 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_203 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_204 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_205 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_206 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_207 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_208 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_209 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_210 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_211 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_214 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_216 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_217 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_218 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_220 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_222 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_223 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_224 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_226 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_227 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_228 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_229 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_230 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_231 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_232 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_233 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_234 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_235 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_236 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_237 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_238 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_239 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_240 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_241 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_243 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_244 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_245 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_247 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_248 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_249 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_250 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_251 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_253 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_254 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_255 | 1.0 | 0.0 | 1.0 |
| LKGHKPBA_256 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_257 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_258 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_259 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_260 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_261 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_262 | 0.0 | 1.0 | 0.0 |
| LKGHKPBA_263 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LKGHKPBA_115 | 2209 | 21496 | False | Siphoviridae | VOG5008, VOG4828, VOG6163, VOG2225, VOG4586, VOG0704, VOG0539, VOG0204, VOG4553, VOG4568, VOG4556, VOG0202, VOG4544, VOG4581, VOG4841 |
| LKGHKPBA_239 | 76831 | 82844 | False | Siphoviridae | VOG7393, VOG10254, VOG0275, VOG4602, VOG8520, VOG8520, VOG6495, VOG0831, VOG8353 |
| LKGHKPBA_259 | 23194 | 31546 | False | Siphoviridae | VOG0275, VOG9667, VOG3699, VOG4552, VOG3379, VOG8056, VOG8353, VOG8625, VOG7006, VOG4632, VOG4606 |
Phigaro v2.4.0 (Database: Jan. 2024 release)