Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HMNKAMBO_1 | 0.0 | 1.0 | 0.0 |
| HMNKAMBO_2 | 0.0 | 1.0 | 0.0 |
| HMNKAMBO_3 | 0.0 | 1.0 | 0.0 |
| HMNKAMBO_4 | 0.0 | 1.0 | 0.0 |
| HMNKAMBO_5 | 0.0 | 1.0 | 0.0 |
| HMNKAMBO_6 | 0.0 | 1.0 | 0.0 |
| HMNKAMBO_7 | 0.0 | 1.0 | 0.0 |
| HMNKAMBO_8 | 0.0 | 1.0 | 0.0 |
| HMNKAMBO_9 | 0.0 | 1.0 | 0.0 |
| HMNKAMBO_10 | 0.0 | 1.0 | 0.0 |
| HMNKAMBO_11 | 0.0 | 1.0 | 0.0 |
| HMNKAMBO_12 | 0.0 | 1.0 | 0.0 |
| HMNKAMBO_13 | 0.0 | 1.0 | 0.0 |
| HMNKAMBO_14 | 0.0 | 1.0 | 0.0 |
| HMNKAMBO_15 | 0.0 | 1.0 | 0.0 |
| HMNKAMBO_16 | 0.0 | 1.0 | 0.0 |
| HMNKAMBO_17 | 0.0 | 1.0 | 0.0 |
| HMNKAMBO_18 | 0.0 | 1.0 | 0.0 |
| HMNKAMBO_19 | 0.0 | 1.0 | 0.0 |
| HMNKAMBO_20 | 0.0 | 1.0 | 0.0 |
| HMNKAMBO_21 | 0.0 | 1.0 | 0.0 |
| HMNKAMBO_22 | 1.0 | 0.0 | 1.0 |
| HMNKAMBO_23 | 0.0 | 1.0 | 0.0 |
| HMNKAMBO_24 | 0.0 | 1.0 | 0.0 |
| HMNKAMBO_25 | 0.0 | 1.0 | 0.0 |
| HMNKAMBO_26 | 0.0 | 1.0 | 0.0 |
| HMNKAMBO_28 | 0.0 | 1.0 | 0.0 |
| HMNKAMBO_30 | 1.0 | 0.0 | 1.0 |
| HMNKAMBO_31 | 0.0 | 1.0 | 0.0 |
| HMNKAMBO_34 | 0.0 | 1.0 | 0.0 |
| HMNKAMBO_44 | 0.0 | 1.0 | 0.0 |
| HMNKAMBO_45 | 0.0 | 1.0 | 0.0 |
| HMNKAMBO_46 | 0.0 | 1.0 | 0.0 |
| HMNKAMBO_47 | 0.0 | 1.0 | 0.0 |
| HMNKAMBO_48 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HMNKAMBO_1 | 60948 | 90055 | False | Siphoviridae | VOG4548, VOG6414, VOG0322, VOG6545, VOG4632, VOG4609, VOG6495, VOG6414, VOG5278, VOG0327, VOG0198, VOG5413, VOG8453, VOG0796, VOG10227, VOG0720, VOG4564, VOG10914, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4633, VOG6163, VOG7906, VOG5008, VOG0861, VOG9888 |
| HMNKAMBO_12 | 146519 | 171832 | False | Myoviridae | VOG5087, VOG0861, VOG4705, VOG9945, VOG5763, VOG4862, VOG4691, VOG3894, VOG4885, VOG4865, VOG3636, VOG3892, VOG3891, VOG3890, VOG5612, VOG4870, VOG1900, VOG3888, VOG4623, VOG4572, VOG4555, VOG10904, VOG4564, VOG0720, VOG4544, VOG1517, VOG0338, VOG0198 |
Phigaro v2.4.0 (Database: Jan. 2024 release)