Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NDFNHKLM_69 | 39805 | 43368 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 92.48 | 100.08 | NC_008618.1 |
| NDFNHKLM_14 | 822 | 1676 | ErmX | ARO:3000596 | ErmX | 90.14 | 100.00 | M36726.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NDFNHKLM_14 | 914 | 1676 | erm(X) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.74 | 100.00 | U21300 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NDFNHKLM_14 | 825 | 1676 | erm(X) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(X) | BLASTX | 99.65 | 100.00 | WP_011117480.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NDFNHKLM_1 | 0.0 | 1.0 | 0.0 |
| NDFNHKLM_2 | 0.0 | 1.0 | 0.0 |
| NDFNHKLM_4 | 0.0 | 1.0 | 0.0 |
| NDFNHKLM_5 | 0.0 | 1.0 | 0.0 |
| NDFNHKLM_6 | 0.0 | 1.0 | 0.0 |
| NDFNHKLM_7 | 0.0 | 1.0 | 0.0 |
| NDFNHKLM_8 | 0.0 | 1.0 | 0.0 |
| NDFNHKLM_9 | 0.0 | 1.0 | 0.0 |
| NDFNHKLM_10 | 0.0 | 1.0 | 0.0 |
| NDFNHKLM_11 | 0.0 | 1.0 | 0.0 |
| NDFNHKLM_12 | 0.0 | 1.0 | 0.0 |
| NDFNHKLM_13 | 1.0 | 0.0 | 1.0 |
| NDFNHKLM_14 | 0.0 | 1.0 | 0.0 |
| NDFNHKLM_15 | 0.0 | 1.0 | 0.0 |
| NDFNHKLM_16 | 0.0 | 1.0 | 0.0 |
| NDFNHKLM_17 | 1.0 | 0.0 | 1.0 |
| NDFNHKLM_18 | 0.0 | 1.0 | 0.0 |
| NDFNHKLM_19 | 0.0 | 1.0 | 0.0 |
| NDFNHKLM_21 | 1.0 | 0.0 | 1.0 |
| NDFNHKLM_22 | 1.0 | 0.0 | 1.0 |
| NDFNHKLM_23 | 0.0 | 1.0 | 0.0 |
| NDFNHKLM_25 | 0.0 | 1.0 | 0.0 |
| NDFNHKLM_28 | 1.0 | 0.0 | 1.0 |
| NDFNHKLM_29 | 1.0 | 0.0 | 1.0 |
| NDFNHKLM_33 | 0.0 | 1.0 | 0.0 |
| NDFNHKLM_43 | 1.0 | 0.0 | 1.0 |
| NDFNHKLM_44 | 0.0 | 1.0 | 0.0 |
| NDFNHKLM_55 | 0.0 | 1.0 | 0.0 |
| NDFNHKLM_66 | 0.0 | 1.0 | 0.0 |
| NDFNHKLM_68 | 0.0 | 1.0 | 0.0 |
| NDFNHKLM_69 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NDFNHKLM_55 | 71998 | 100551 | False | Siphoviridae | VOG1243, VOG7108, VOG4602, VOG0275, VOG1154, VOG4544, VOG0720, VOG0720, VOG4576, VOG4555, VOG4553, VOG1581, VOG3409, VOG2638, VOG2639, VOG4557, VOG4582, VOG4545, VOG4633, VOG4599, VOG5372, VOG9502, VOG0602, VOG4567 |
Phigaro v2.4.0 (Database: Jan. 2024 release)