Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 2 | 7 | 7.55 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KJHKIMIA_11 | 56894 | 57943 | clbA | ARO:3002814 | clbA | 99.71 | 100.00 | CP006845.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KJHKIMIA_11 | 56908 | 57943 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 89.09 | 98.67 | KR610408 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KJHKIMIA_11 | 56897 | 57943 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 99.71 | 100.00 | WP_012116915.1 |
| KJHKIMIA_1 | 103446 | 106040 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.00 | 100.00 | WP_087347987.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| KJHKIMIA_7 | 74800 | 75981 | capB | 0.0 | Capsule | Immune modulation | 81.79 | 99.66 | NP_391471 |
| KJHKIMIA_7 | 74336 | 74785 | capC | 8.34e-117 | Capsule | Immune modulation | 83.81 | 99.78 | NP_391470 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KJHKIMIA_18 | 31645 | 32781 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| KJHKIMIA_29 | 12371 | 11502 | pdxS | 1.34e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| KJHKIMIA_1 | 310448 | 309672 | CodY | 4.31e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| KJHKIMIA_56 | 132628 | 133020 | spxA1 | 4.20e-70 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| KJHKIMIA_11 | 78165 | 77968 | CspA | 5.47e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| KJHKIMIA_4 | 22959 | 23153 | CspD | 3.25e-28 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| KJHKIMIA_4 | 22959 | 23156 | CspB | 6.73e-28 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| KJHKIMIA_11 | 78165 | 77971 | CspR | 7.17e-27 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| KJHKIMIA_34 | 84931 | 85803 | lipA (SAUSA300_0829) | 7.10e-163 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KJHKIMIA_1 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_2 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_3 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_4 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_5 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_6 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_7 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_8 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_9 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_10 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_11 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_12 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_13 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_14 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_15 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_16 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_17 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_18 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_19 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_20 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_21 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_22 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_23 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_24 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_25 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_26 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_27 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_28 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_29 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_30 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_31 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_32 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_33 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_34 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_35 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_36 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_37 | 1.0 | 0.0 | 1.0 |
| KJHKIMIA_38 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_39 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_40 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_41 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_42 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_43 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_44 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_45 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_47 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_48 | 1.0 | 0.0 | 1.0 |
| KJHKIMIA_50 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_51 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_52 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_53 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_55 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_56 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_57 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_67 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_78 | 0.0 | 1.0 | 0.0 |
| KJHKIMIA_89 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KJHKIMIA_4 | 41196 | 67005 | False | Siphoviridae | VOG0052, VOG10230, VOG0641, VOG7896, VOG3390, VOG4612, VOG4660, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG5361, VOG4553, VOG4568, VOG4556, VOG4544, VOG4581, VOG2703 |
| KJHKIMIA_67 | 116316 | 142098 | False | Myoviridae | VOG0136, VOG0753, VOG4705, VOG3390, VOG4612, VOG4862, VOG4691, VOG4550, VOG3894, VOG4885, VOG4865, VOG6163, VOG3892, VOG3891, VOG3890, VOG10055, VOG0749, VOG4685, VOG4773, VOG10227, VOG0796, VOG5447, VOG4861, VOG0189 |
Phigaro v2.4.0 (Database: Jan. 2024 release)